filterGO                package:GOSim                R Documentation

_F_i_l_t_e_r _G_O.

_D_e_s_c_r_i_p_t_i_o_n:

     Filter out genes from a list not mapping to the actual ontology.
     Genes not mapping to the currently set ontology ("BP","MF","CC")
     and not having one of the predefined evidence codes (default is to
     use all evidence codes) are removed.

_U_s_a_g_e:

     filterGO(genelist)

_A_r_g_u_m_e_n_t_s:

genelist: character vector of Entrez gene IDs 

_V_a_l_u_e:

     List with items 

"genename": gene ID

"annotation": character vector of GO terms mapping to the gene within
          the actual ontology

_N_o_t_e:

     The result depends on the currently set ontology. IMPORTANT: The
     result refers to the GO library that was used to precompute the
     information contence of GO terms.

_A_u_t_h_o_r(_s):

     Holger Froehlich

_S_e_e _A_l_s_o:

     'setOntology', 'setEvidenceLevel', 'getGOInfo', 'calcICs'

_E_x_a_m_p_l_e_s:

             filterGO(c("12345","4559"))
             # --> 4559 is removed

