calcICs	calcICs
calcTermSim	internal
evaluateClustering	evaluateClustering
filterGO	filterGO
getAncestors	getAncestors
getChildren	getChildren
getDensityFactor	internal
getDepthFactor	internal
getDisjAnc	internal
getDisjCommAnc	getDisjCommAnc
getDisjCommAncSim	internal
getEnrichedSim	internal
getGeneFeaturesPrototypes	getGeneFeaturesPrototypes
getGeneSim	getGeneSim
getGeneSimPrototypes	getGeneSimPrototypes
getGOGraph	getGOGraph
getGOInfo	getGOInfo
getGSim	internal
getMinimumSubsumer	getMinimumSubsumer
getOffsprings	getOffsprings
getParents	getParents
getTermSim	getTermSim
IC	IC
ICsBP	IC
ICsBPIMP_IGI_IDA_IEP_IPI	IC
ICsCCall	IC
ICsCCIMP_IGI_IDA_IEP_IPI	IC
ICsMFall	IC
ICsMFIMP_IGI_IDA_IEP_IPI	IC
initialize	internal
internal	internal
norm	internal
pca	internal
precomputeTermSims	internal
selectPrototypes	selectPrototypes
setEnrichmentFactors	setEnrichmentFactors
setEvidenceLevel	setEvidenceLevel
setOntology	setOntology
