Entry: GdataPed
Aliases: GdataPed is.GdataPed
Keywords: classes
Description: GdataPed Object
URL: ../../../library/MasterBayes/html/GdataPed.html

Entry: MCMCped
Aliases: MCMCped
Keywords: models
Description: Markov chain Monte Carlo Methods for Pedigree Reconstruction and Analysis
URL: ../../../library/MasterBayes/html/MCMCped.html

Entry: MLE.beta
Aliases: MLE.beta
Keywords: models optimize
Description: Maximum Likelihood Estimation of Beta
URL: ../../../library/MasterBayes/html/MLE.beta.html

Entry: MLE.ped
Aliases: MLE.ped
Keywords: models optimize
Description: Maximum Likelihood Estimation of the Pedigree
URL: ../../../library/MasterBayes/html/MLE.ped.html

Entry: MLE.popsize
Aliases: MLE.popsize
Keywords: models optimize
Description: Maximum Likelihood Estimation of the Unsampled Population Size
URL: ../../../library/MasterBayes/html/MLE.popsize.html

Entry: MasterBayes
Aliases: MasterBayes
Keywords: package
Description: Maximum Likelihood and Markov chain Monte Carlo methods for Pedigree Reconstruction, Analysis and Simulation.
URL: ../../../library/MasterBayes/html/MasterBayes.html

Entry: PdataPed
Aliases: PdataPed is.PdataPed
Keywords: classes
Description: PdataPed Object
URL: ../../../library/MasterBayes/html/PdataPed.html

Entry: WarblerG
Aliases: WarblerG
Keywords: datasets
Description: Seychelles Warbler Genotypes
URL: ../../../library/MasterBayes/html/WarblerG.html

Entry: WarblerP
Aliases: WarblerP
Keywords: datasets
Description: Seychelles Warbler Phenotypes
URL: ../../../library/MasterBayes/html/WarblerP.html

Entry: beta.loglik
Aliases: beta.loglik
Keywords: models
Description: Log-Likelihood of Beta
URL: ../../../library/MasterBayes/html/beta.loglik.html

Entry: extractA
Aliases: extractA
Keywords: manip
Description: Allele Frequencies
URL: ../../../library/MasterBayes/html/extractA.html

Entry: fillX.G
Aliases: fillX.G
Keywords: manip
Description: Mendelian Transition Probalities
URL: ../../../library/MasterBayes/html/fillX.G.html

Entry: genotype.list
Aliases: genotype.list
Keywords: manip
Description: Genotype Objects for all Loci
URL: ../../../library/MasterBayes/html/genotype.list.html

Entry: genotypeD
Aliases: genotypeD is.genotypeD
Keywords: classes
Description: genotypeD Object
URL: ../../../library/MasterBayes/html/genotypeD.html

Entry: getXlist
Aliases: getXlist
Keywords: manip models
Description: Design Matrices for the Multinomial Log-Linear Model
URL: ../../../library/MasterBayes/html/getXlist.html

Entry: legalG
Aliases: legalG
Keywords: manip models
Description: Legal Genotype Configurations
URL: ../../../library/MasterBayes/html/legalG.html

Entry: mismatches
Aliases: mismatches
Keywords: manip
Description: Parent-Offspring Genotype Mismatches
URL: ../../../library/MasterBayes/html/mismatches.html

Entry: modeG
Aliases: modeG
Keywords: distribution
Description: Posterior Mode of Genotypes
URL: ../../../library/MasterBayes/html/modeG.html

Entry: modeP
Aliases: modeP
Keywords: distribution
Description: Posterior Mode of Parents
URL: ../../../library/MasterBayes/html/modeP.html

Entry: order.ped
Aliases: order.ped
Keywords: manip
Description: Orders a Pedigree
URL: ../../../library/MasterBayes/html/order.ped.html

Entry: popsize.loglik
Aliases: popsize.loglik
Keywords: models
Description: Log-Likelihood of Unsampled Population Size
URL: ../../../library/MasterBayes/html/popsize.loglik.html

Entry: priorPed
Aliases: priorPed is.priorPed
Keywords: classes
Description: priorPed Object
URL: ../../../library/MasterBayes/html/priorPed.html

Entry: reordXlist
Aliases: reordXlist
Keywords: manip
Description: Reorders Design Matrices
URL: ../../../library/MasterBayes/html/reordXlist.html

Entry: simgenotypes
Aliases: simgenotypes
Keywords: datagen
Description: Genotype and Genotyping Error Simulation
URL: ../../../library/MasterBayes/html/simgenotypes.html

Entry: simpedigree
Aliases: simpedigree
Keywords: datagen
Description: Simulates a Pedigree given a Log-Linear Model
URL: ../../../library/MasterBayes/html/simpedigree.html

Entry: startPed
Aliases: startPed is.startPed
Keywords: classes
Description: startPed Object
URL: ../../../library/MasterBayes/html/startPed.html

Entry: summary.genotypeD
Aliases: summary.genotypeD
Keywords: misc
Description: genotypeD Object
URL: ../../../library/MasterBayes/html/summary.genotypeD.html

Entry: tunePed
Aliases: tunePed is.tunePed
Keywords: classes
Description: tunePed Object
URL: ../../../library/MasterBayes/html/tunePed.html

Entry: varPed
Aliases: varPed
Keywords: models manip
Description: Transforms Variables for a Multinomial Log-Linear Model
URL: ../../../library/MasterBayes/html/varPed.html
