Entry: birthdeath.simulation
Aliases: birthdeath.simulation
Keywords: models
Description: Simulate batches of birth death Trees
URL: ../../../library/PhySim/html/birthdeath.simulation.html

Entry: birthdeath.tree
Aliases: birthdeath.tree
Keywords: models
Description: Simulate a birth death phylogenetic tree
URL: ../../../library/PhySim/html/birthdeath.tree.html

Entry: branchingPhySim.times
Aliases: branchingPhySim.times
Keywords: internal
Description: Internal function
URL: ../../../library/PhySim/html/branchingPhySim.times.html

Entry: dropPhySim.tip
Aliases: dropPhySim.tip
Keywords: internal
Description: Internal function
URL: ../../../library/PhySim/html/dropPhySim.tip.html

Entry: extract.sister
Aliases: extract.sister
Keywords: univar
Description: Extract sister species pairs
URL: ../../../library/PhySim/html/extract.sister.html

Entry: lagtime
Aliases: lagtime
Keywords: models
Description: Correction for lag-time to speciation along a phylogeny
URL: ../../../library/PhySim/html/lagtime.html

Entry: lagtime.batch
Aliases: lagtime.batch
Keywords: models
Description: Correct for lag-time to speciation along a series of phylogenetic trees
URL: ../../../library/PhySim/html/lagtime.batch.html

Entry: readPhySim.tree
Aliases: readPhySim.tree
Keywords: manip IO
Description: Read Tree File in Parenthetic Format
URL: ../../../library/PhySim/html/readPhySim.tree.html

Entry: regexpr.simple
Aliases: regexpr.simple
Keywords: internal
Description: Internal function
URL: ../../../library/PhySim/html/regexpr.simple.html

Entry: writePhySim.tree
Aliases: writePhySim.tree
Keywords: manip IO
Description: Write Tree File in Parenthetic Format
URL: ../../../library/PhySim/html/writePhySim.tree.html
