Entry: SNP.dat
Aliases: SNP.dat
Keywords: datasets
Description: Example genotypic data
URL: ../../../library/SimHap/html/SNP.dat.html

Entry: SNP2Geno
Aliases: SNP2Geno
Keywords: manip
Description: Convert biallelic SNP data to genotype count data
URL: ../../../library/SimHap/html/SNP2Geno.html

Entry: SNP2Haplo
Aliases: SNP2Haplo
Keywords: manip
Description: Convert biallelic SNP data to haplo format
URL: ../../../library/SimHap/html/SNP2Haplo.html

Entry: SNPlong.dat
Aliases: SNPlong.dat
Keywords: datasets
Description: Example genotypic data for longitudinal analysis
URL: ../../../library/SimHap/html/SNPlong.dat.html

Entry: SNPsurv.dat
Aliases: SNPsurv.dat
Keywords: datasets
Description: Example genotypic data for survival analysis
URL: ../../../library/SimHap/html/SNPsurv.dat.html

Entry: epi.bin
Aliases: epi.bin
Keywords: models
Description: Epidemiological analysis for binary outcomes
URL: ../../../library/SimHap/html/epi.bin.html

Entry: epi.cc.match
Aliases: epi.cc.match
Keywords: models
Description: Epidemiological analysis for matched case-control data
URL: ../../../library/SimHap/html/epi.cc.match.html

Entry: epi.long
Aliases: epi.long
Keywords: models
Description: Epidemiological analysis for longitudinal data
URL: ../../../library/SimHap/html/epi.long.html

Entry: epi.quant
Aliases: epi.quant
Keywords: models
Description: Epidemiological analysis for quantitative outcomes
URL: ../../../library/SimHap/html/epi.quant.html

Entry: epi.surv
Aliases: epi.surv
Keywords: models
Description: Epidemiological analysis for survival data
URL: ../../../library/SimHap/html/epi.surv.html

Entry: haplo.bin
Aliases: haplo.bin
Keywords: models
Description: Haplotype analysis for a binary trait
URL: ../../../library/SimHap/html/haplo.bin.html

Entry: haplo.cc.match
Aliases: haplo.cc.match
Keywords: models
Description: Haplotype analysis for matched case-control data
URL: ../../../library/SimHap/html/haplo.cc.match.html

Entry: haplo.long
Aliases: haplo.long
Keywords: models
Description: Haplotype analysis for a longitudinal data
URL: ../../../library/SimHap/html/haplo.long.html

Entry: haplo.quant
Aliases: haplo.quant
Keywords: models
Description: Haplotype analysis for a Normally distributed quantitative trait
URL: ../../../library/SimHap/html/haplo.quant.html

Entry: haplo.surv
Aliases: haplo.surv
Keywords: models
Description: Haplotype analysis for survival data
URL: ../../../library/SimHap/html/haplo.surv.html

Entry: infer.haplos
Aliases: infer.haplos
Keywords: manip
Description: Infer haplotype configurations when phase is unknown
URL: ../../../library/SimHap/html/infer.haplos.html

Entry: infer.haplos.cc
Aliases: infer.haplos.cc
Keywords: manip
Description: Infer haplotype configuration independently in cases and controls
URL: ../../../library/SimHap/html/infer.haplos.cc.html

Entry: longPheno.dat
Aliases: longPheno.dat
Keywords: datasets
Description: Example phenotypic, longitudinal data
URL: ../../../library/SimHap/html/longPheno.dat.html

Entry: make.haplo.rare
Aliases: make.haplo.rare
Keywords: manip
Description: Group rare haplotypes together
URL: ../../../library/SimHap/html/make.haplo.rare.html

Entry: pheno.dat
Aliases: pheno.dat
Keywords: datasets
Description: Example phenotypic data
URL: ../../../library/SimHap/html/pheno.dat.html

Entry: prepare.cc
Aliases: prepare.cc
Keywords: manip
Description: Prepare case-control data for inferring haplotypes
URL: ../../../library/SimHap/html/prepare.cc.html

Entry: snp.bin
Aliases: snp.bin
Keywords: models
Description: Single SNP analysis for binary outcomes
URL: ../../../library/SimHap/html/snp.bin.html

Entry: snp.cc.match
Aliases: snp.cc.match
Keywords: models
Description: Single SNP analysis for matched case-control data
URL: ../../../library/SimHap/html/snp.cc.match.html

Entry: snp.long
Aliases: snp.long
Keywords: models
Description: Single SNP analysis for longitudinal data
URL: ../../../library/SimHap/html/snp.long.html

Entry: snp.quant
Aliases: snp.quant
Keywords: models
Description: Single SNP analysis for quantitative outcomes
URL: ../../../library/SimHap/html/snp.quant.html

Entry: snp.surv
Aliases: snp.surv
Keywords: models
Description: Single SNP analysis for survival data
URL: ../../../library/SimHap/html/snp.surv.html

Entry: summary.epiBin
Aliases: summary.epiBin print.summary.epiBin
Keywords: methods
Description: Summarizing epidemiological analysis models for binary outcomes
URL: ../../../library/SimHap/html/summary.epiBin.html

Entry: summary.epiClogit
Aliases: summary.epiClogit print.summary.epiClogit
Keywords: models
Description: Summarizing epidemiological analysis models for matched case-control data
URL: ../../../library/SimHap/html/summary.epiClogit.html

Entry: summary.epiLong
Aliases: summary.epiLong print.summary.epiLong
Keywords: methods
Description: Summarizing epidemiological analysis models for longitudinal data
URL: ../../../library/SimHap/html/summary.epiLong.html

Entry: summary.epiQuant
Aliases: summary.epiQuant print.summary.epiQuant
Keywords: methods
Description: Summarizing epidemiological analysis models for quantitative outcomes
URL: ../../../library/SimHap/html/summary.epiQuant.html

Entry: summary.epiSurv
Aliases: summary.epiSurv print.summary.epiSurv
Keywords: models
Description: Summarizing epidemiological analysis models for survival data
URL: ../../../library/SimHap/html/summary.epiSurv.html

Entry: summary.hapBin
Aliases: summary.hapBin print.summary.hapBin
Keywords: methods
Description: Summarize binary haplotype analysis models
URL: ../../../library/SimHap/html/summary.hapBin.html

Entry: summary.hapClogit
Aliases: summary.hapClogit print.summary.hapClogit
Keywords: methods
Description: Summarize haplotype analysis models for matched case-control data
URL: ../../../library/SimHap/html/summary.hapClogit.html

Entry: summary.hapLong
Aliases: summary.hapLong print.summary.hapLong
Keywords: methods
Description: Summarizing single SNP analysis models for longitudinal data
URL: ../../../library/SimHap/html/summary.hapLong.html

Entry: summary.hapQuant
Aliases: summary.hapQuant print.summary.hapQuant
Keywords: methods
Description: Summarize quantitative haplotype analysis models
URL: ../../../library/SimHap/html/summary.hapQuant.html

Entry: summary.hapSurv
Aliases: summary.hapSurv print.summary.hapSurv
Keywords: methods
Description: Summarize haplotype analysis models for survival data
URL: ../../../library/SimHap/html/summary.hapSurv.html

Entry: summary.snpBin
Aliases: summary.snpBin print.summary.snpBin
Keywords: methods
Description: Summarizing Single SNP analysis models
URL: ../../../library/SimHap/html/summary.snpBin.html

Entry: summary.snpClogit
Aliases: summary.snpClogit print.summary.snpClogit
Keywords: methods
Description: Summarizing Single SNP analysis models for matched case-control data
URL: ../../../library/SimHap/html/summary.snpClogit.html

Entry: summary.snpLong
Aliases: summary.snpLong print.summary.snpLong
Keywords: models
Description: Summarizing single SNP analysis models for longitudinal data
URL: ../../../library/SimHap/html/summary.snpLong.html

Entry: summary.snpQuant
Aliases: summary.snpQuant print.summary.snpQuant
Keywords: methods
Description: Summarizing single SNP analysis models for quantitative outcomes
URL: ../../../library/SimHap/html/summary.snpQuant.html

Entry: summary.snpSurv
Aliases: summary.snpSurv print.summary.snpSurv
Keywords: methods
Description: Summarizing Single SNP analysis models for survival data
URL: ../../../library/SimHap/html/summary.snpSurv.html

Entry: survPheno.dat
Aliases: survPheno.dat
Keywords: datasets
Description: Example phenotypic survival data
URL: ../../../library/SimHap/html/survPheno.dat.html
