Entry: TRAMP
Aliases: TRAMP
Keywords: multivariate cluster
Description: TRFLP Analysis and Matching Program
URL: ../../../library/TRAMPR/html/TRAMP.html

Entry: TRAMPR-package
Aliases: TRAMPR-package TRAMPR
Keywords: package
Description: The TRAMPR Package (TRFLP Analysis and Matching Package for R)
URL: ../../../library/TRAMPR/html/TRAMPR-package.html

Entry: TRAMPindexing
Aliases: TRAMPindexing [.TRAMPknowns [.TRAMPsamples
Keywords: array methods
Description: Index (Subset) TRAMPsamples and TRAMPknowns Objects
URL: ../../../library/TRAMPR/html/TRAMPindexing.html

Entry: TRAMPknowns
Aliases: TRAMPknowns labels.TRAMPknowns summary.TRAMPknowns
Keywords: classes
Description: TRAMPknowns Objects
URL: ../../../library/TRAMPR/html/TRAMPknowns.html

Entry: TRAMPsamples
Aliases: TRAMPsamples labels.TRAMPsamples summary.TRAMPsamples
Keywords: classes
Description: TRAMPsamples Objects
URL: ../../../library/TRAMPR/html/TRAMPsamples.html

Entry: absolute.min
Aliases: absolute.min
Keywords: utilities internal univar arith
Description: Absolute Minimum
URL: ../../../library/TRAMPR/html/absolute.min.html

Entry: add.known
Aliases: add.known add.known.TRAMP add.known.TRAMPknowns combine.TRAMP combine.TRAMPknowns
Keywords: manip
Description: Add Knowns To TRAMPknowns Databases
URL: ../../../library/TRAMPR/html/add.known.html

Entry: build.knowns
Aliases: build.knowns
Keywords: multivariate cluster datagen
Description: Automatically Build Knowns Database
URL: ../../../library/TRAMPR/html/build.knowns.html

Entry: classify
Aliases: classify
Keywords: utilities manip logic internal
Description: Value Matching for Data Frames
URL: ../../../library/TRAMPR/html/classify.html

Entry: combine
Aliases: combine
Keywords: methods
Description: Combine Two Objects
URL: ../../../library/TRAMPR/html/combine.html

Entry: combine.TRAMPsamples
Aliases: combine.TRAMPsamples
Keywords: manip
Description: Combine TRAMPsamples Objects
URL: ../../../library/TRAMPR/html/combine.TRAMPsamples.html

Entry: create.diffsmatrix
Aliases: create.diffsmatrix
Keywords: multivariate cluster
Description: Calculate Matrix of Distances between Peaks
URL: ../../../library/TRAMPR/html/create.diffsmatrix.html

Entry: demo.knowns
Aliases: demo.knowns
Keywords: datasets
Description: Demonstration Knowns Database
URL: ../../../library/TRAMPR/html/demo.knowns.html

Entry: demo.samples
Aliases: demo.samples
Keywords: datasets
Description: Demonstration Samples Database
URL: ../../../library/TRAMPR/html/demo.samples.html

Entry: group.knowns
Aliases: group.knowns group.knowns.TRAMP group.knowns.TRAMPknowns
Keywords: multivariate cluster
Description: Knowns Clustering
URL: ../../../library/TRAMPR/html/group.knowns.html

Entry: load.abi
Aliases: load.abi load.abi.create.template load.abi.create.info peakscanner.to.genemapper
Keywords: file
Description: Load ABI Output Files
URL: ../../../library/TRAMPR/html/load.abi.html

Entry: plot.TRAMP
Aliases: plot.TRAMP TRAMP.plotone
Keywords: hplot
Description: Plot a TRAMP Object
URL: ../../../library/TRAMPR/html/plot.TRAMP.html

Entry: plot.TRAMPknowns
Aliases: plot.TRAMPknowns
Keywords: hplot
Description: Summary Plot of Knowns Data
URL: ../../../library/TRAMPR/html/plot.TRAMPknowns.html

Entry: plot.TRAMPsamples
Aliases: plot.TRAMPsamples TRAMPsamples.plotone
Keywords: hplot
Description: Plot a TRAMPsamples Object
URL: ../../../library/TRAMPR/html/plot.TRAMPsamples.html

Entry: read.abi
Aliases: read.abi
Keywords: file connection
Description: Read ABI Output Files
URL: ../../../library/TRAMPR/html/read.abi.html

Entry: read.write
Aliases: read.TRAMPknowns write.TRAMPknowns read.TRAMPsamples write.TRAMPsamples
Keywords: file
Description: Read/Write TRAMPknowns and TRAMPsamples Objects
URL: ../../../library/TRAMPR/html/read.write.html

Entry: rebuild.TRAMP
Aliases: rebuild.TRAMP
Keywords: multivariate cluster
Description: Rebuild a TRAMP Object
URL: ../../../library/TRAMPR/html/rebuild.TRAMP.html

Entry: remove.TRAMP.match
Aliases: remove.TRAMP.match
Keywords: manip
Description: Mark a TRAMP Match as Ignored
URL: ../../../library/TRAMPR/html/remove.TRAMP.match.html

Entry: summary.TRAMP
Aliases: summary.TRAMP
Keywords: methods
Description: Create Presence/Absence Matrices from TRAMP Objects
URL: ../../../library/TRAMPR/html/summary.TRAMP.html

Entry: update.TRAMP
Aliases: update.TRAMP
Keywords: multivariate cluster
Description: Interactively Alter a TRAMP Object
URL: ../../../library/TRAMPR/html/update.TRAMP.html
