Entry: bayesBisurvreg
Aliases: bayesBisurvreg
Keywords: survival regression multivariate
Description: Population-averaged accelerated failure time model for bivariate, possibly doubly-interval-censored data. The error distribution is expressed as a~penalized bivariate normal mixture with high number of components (bivariate G-spline).
URL: ../../../library/bayesSurv/html/bayesBisurvreg.html

Entry: bayesBisurvreg.help
Aliases: bayesBisurvreg.help bayesBisurvreg.checkStore bayesBisurvreg.priorInit bayesBisurvreg.priorBeta bayesBisurvreg.writeHeaders
Keywords: internal
Description: Helping function for Bayesian regression with smoothed bivariate densities as the error term, based on possibly censored data
URL: ../../../library/bayesSurv/html/bayesBisurvreg.help.html

Entry: bayesDensity
Aliases: bayesDensity
Keywords: smooth
Description: Summary for the density estimate based on the mixture Bayesian AFT model.
URL: ../../../library/bayesSurv/html/bayesDensity.html

Entry: bayesGspline
Aliases: bayesGspline
Keywords: smooth
Description: Summary for the density estimate based on the model with Bayesian G-splines.
URL: ../../../library/bayesSurv/html/bayesGspline.html

Entry: bayesHistogram
Aliases: bayesHistogram
Keywords: smooth survival multivariate
Description: Smoothing of a uni- or bivariate histogram using Bayesian G-splines
URL: ../../../library/bayesSurv/html/bayesHistogram.html

Entry: bayesHistogram.help
Aliases: bayesHistogram.help bayesHistogram.design bayesHistogram.checkStore bayesHistogram.priorInit bayesHistogram.writeHeaders
Keywords: internal
Description: Helping function for Bayesian smoothing of (bi)-variate densities based on possibly censored data
URL: ../../../library/bayesSurv/html/bayesHistogram.help.html

Entry: bayessurvreg.help
Aliases: bayessurvreg.help bayessurvreg.design bayessurvreg.checknsimul
Keywords: internal
Description: Helping function for Bayesian survival regression models.
URL: ../../../library/bayesSurv/html/bayessurvreg.help.html

Entry: bayessurvreg1
Aliases: bayessurvreg1
Keywords: survival regression multivariate
Description: A Bayesian survival regression with an error distribution expressed as a~normal mixture with unknown number of components
URL: ../../../library/bayesSurv/html/bayessurvreg1.html

Entry: bayessurvreg1.files2init
Aliases: bayessurvreg1.files2init
Keywords: file
Description: Read the initial values for the Bayesian survival regression model to the list.
URL: ../../../library/bayesSurv/html/bayessurvreg1.files2init.html

Entry: bayessurvreg1.help
Aliases: bayessurvreg1.help bayessurvreg1.checkStore bayessurvreg1.priorInit bayessurvreg1.priorBeta bayessurvreg1.priorb bayessurvreg1.writeHeaders bayessurvreg1.revjump
Keywords: internal
Description: Helping function for Bayesian survival regression models, version 1.
URL: ../../../library/bayesSurv/html/bayessurvreg1.help.html

Entry: bayessurvreg2
Aliases: bayessurvreg2
Keywords: survival regression multivariate
Description: Cluster-specific accelerated failure time model for multivariate, possibly doubly-interval-censored data. The error distribution is expressed as a~penalized univariate normal mixture with high number of components (G-spline). The distribution of the vector of random effects is multivariate normal.
URL: ../../../library/bayesSurv/html/bayessurvreg2.html

Entry: bayessurvreg2.help
Aliases: bayessurvreg2.help bayessurvreg2.checkStore bayessurvreg2.priorInit bayessurvreg2.priorBeta bayessurvreg2.priorb bayessurvreg2.writeHeaders
Keywords: internal
Description: Helping functions for Bayesian regression with an error distribution smoothed using G-splines
URL: ../../../library/bayesSurv/html/bayessurvreg2.help.html

Entry: bayessurvreg3
Aliases: bayessurvreg3
Keywords: survival regression multivariate
Description: Cluster-specific accelerated failure time model for multivariate, possibly doubly-interval-censored data with flexibly specified random effects and/or error distribution.
URL: ../../../library/bayesSurv/html/bayessurvreg3.html

Entry: bayessurvreg3.help
Aliases: bayessurvreg3.help bayessurvreg3.checkStore bayessurvreg3.priorInit bayessurvreg3.priorBeta bayessurvreg3.priorb bayessurvreg3.writeHeaders bayessurvreg3.priorinitNb bayessurvreg3.checkrho
Keywords: internal
Description: Helping functions for Bayesian regression with an error distribution smoothed using G-splines
URL: ../../../library/bayesSurv/html/bayessurvreg3.help.html

Entry: cgd
Aliases: cgd
Keywords: datasets
Description: Chronic Granulomatous Disease data
URL: ../../../library/bayesSurv/html/cgd.html

Entry: credible.region
Aliases: credible.region
Keywords: htest
Description: Compute a simultaneous credible region (rectangle) from a sample for a vector valued parameter.
URL: ../../../library/bayesSurv/html/credible.region.html

Entry: densplot2
Aliases: densplot2
Keywords: hplot
Description: Probability density function estimate from MCMC output
URL: ../../../library/bayesSurv/html/densplot2.html

Entry: files.Gspline
Aliases: clean.Gspline write.headers.Gspline
Keywords: internal
Description: Write headers to or clean files with sampled G-spline
URL: ../../../library/bayesSurv/html/files.Gspline.html

Entry: files2coda
Aliases: files2coda
Keywords: connection
Description: Read the sampled values from the Bayesian survival regression model to a coda mcmc object.
URL: ../../../library/bayesSurv/html/files2coda.html

Entry: give.init
Aliases: give.init.Gspline give.init.y give.init.y2 give.init.r
Keywords: internal
Description: Check and possibly fill in initial values for the G-spline, augmented observations and allocations for Bayesian models with G-splines
URL: ../../../library/bayesSurv/html/give.init.html

Entry: give.summary
Aliases: give.summary
Keywords: univar
Description: Brief summary for the chain(s) obtained using the MCMC.
URL: ../../../library/bayesSurv/html/give.summary.html

Entry: marginal.bayesGspline
Aliases: marginal.bayesGspline
Keywords: smooth
Description: Summary for the marginal density estimates based on the bivariate model with Bayesian G-splines.
URL: ../../../library/bayesSurv/html/marginal.bayesGspline.html

Entry: plot.bayesDensity
Aliases: plot.bayesDensity
Keywords: hplot
Description: Plot an object of class bayesDensity
URL: ../../../library/bayesSurv/html/plot.bayesDensity.html

Entry: plot.bayesGspline
Aliases: plot.bayesGspline
Keywords: hplot
Description: Plot an object of class bayesGspline
URL: ../../../library/bayesSurv/html/plot.bayesGspline.html

Entry: plot.marginal.bayesGspline
Aliases: plot.marginal.bayesGspline
Keywords: hplot
Description: Plot an object of class marginal.bayesGspline
URL: ../../../library/bayesSurv/html/plot.marginal.bayesGspline.html

Entry: predictive
Aliases: predictive predictive.control
Keywords: survival regression
Description: Compute predictive quantities based on a Bayesian survival regression model fitted using bayessurvreg1 function.
URL: ../../../library/bayesSurv/html/predictive.html

Entry: predictive2
Aliases: predictive2 predictive2.control
Keywords: survival regression
Description: Compute predictive quantities based on a Bayesian survival regression model fitted using bayesBisurvreg or bayessurvreg2 or bayessurvreg3 functions.
URL: ../../../library/bayesSurv/html/predictive2.html

Entry: print.bayesDensity
Aliases: print.bayesDensity
Keywords: print
Description: Print a summary for the density estimate based on the Bayesian model.
URL: ../../../library/bayesSurv/html/print.bayesDensity.html

Entry: rMVNorm
Aliases: rMVNorm
Keywords: distribution multivariate
Description: Sample from the multivariate normal distribution
URL: ../../../library/bayesSurv/html/rMVNorm.html

Entry: rWishart
Aliases: rWishart
Keywords: distribution multivariate
Description: Sample from the Wishart distribution
URL: ../../../library/bayesSurv/html/rWishart.html

Entry: sampleCovMat
Aliases: sampleCovMat
Keywords: multivariate
Description: Compute a sample covariance matrix.
URL: ../../../library/bayesSurv/html/sampleCovMat.html

Entry: sampled.kendall.tau
Aliases: sampled.kendall.tau
Keywords: smooth
Description: Estimate of the Kendall's tau from the bivariate model
URL: ../../../library/bayesSurv/html/sampled.kendall.tau.html

Entry: scanFN
Aliases: scanFN
Keywords: file connection
Description: Read Data Values
URL: ../../../library/bayesSurv/html/scanFN.html

Entry: simult.pvalue
Aliases: simult.pvalue print.simult.pvalue
Keywords: htest
Description: Compute a simultaneous p-value from a sample for a vector valued parameter.
URL: ../../../library/bayesSurv/html/simult.pvalue.html

Entry: tandmob2
Aliases: tandmob2
Keywords: datasets
Description: Signal Tandmobiel data, version 2
URL: ../../../library/bayesSurv/html/tandmob2.html

Entry: tandmobRoos
Aliases: tandmobRoos
Keywords: datasets
Description: Signal Tandmobiel data, version Roos
URL: ../../../library/bayesSurv/html/tandmobRoos.html

Entry: traceplot2
Aliases: traceplot2
Keywords: hplot
Description: Trace plot of MCMC output.
URL: ../../../library/bayesSurv/html/traceplot2.html

Entry: vecr2matr
Aliases: vecr2matr
Keywords: connection
Description: Transform single component indeces to double component indeces
URL: ../../../library/bayesSurv/html/vecr2matr.html
