bqtl-internal              package:bqtl              R Documentation

_I_n_t_e_r_n_a_l _B_Q_T_L _f_u_n_c_t_i_o_n_s

_D_e_s_c_r_i_p_t_i_o_n:

     Internal bqtl functions and objects

_U_s_a_g_e:

     x %equiv% y
      map.dx(lambda, theta, min.lambda)
     rhs.bqtl(reg.terms, ana.obj, bqtl.specials, local.covar, scope, 
         expand.specials = NULL, method, ...) 
     zero.dup(x,dig=6)
     uniq.config(swap.obj)

_A_r_g_u_m_e_n_t_s:

  lambda: (2*(recomb fraction-1/2) 

   theta: recomb fraction

min.lambda: smallest map distance to use

reg.terms: a formula

 ana.obj: an analysis.object

bqtl.specials: a vector of acceptable special names

local.covar: a function

   scope: vector of strings

expand.specials: logical,whether to use expand.grid on the loci

  method: e'g' "F2", "BC!", etc

     ...: not sure

swap.obj: result of swap

       x: numeric vector or matrix

       y: numeric vector or matrix

     dig: how many significant digits to use

_D_e_t_a_i_l_s:

     These are not to be called by the user.

