catmapdata              package:catmap              R Documentation

_A_n _e_x_a_m_p_l_e _d_a_t_a _f_r_a_m_e _f_o_r _u_s_e _w_i_t_h _c_a_t_m_a_p

_D_e_s_c_r_i_p_t_i_o_n:

     A file for use with 'catmap' containing simulated data.

_U_s_a_g_e:

     data(catmapdata)

_F_o_r_m_a_t:

     A data frame with 5 observations on the following 8 variables.

     '_n_a_m_e' a factor with study name and optionally year of
          publication.  NOTE: if year of publication is included there
          must be no space between study name and year.  A comma or
          underscore work nicely. Example: 'Abrams,2001' 'Peter,2002'
          'Todd,2003' 'Wei,2007' 'Yu,2007'

     '_s_t_u_d_y' a numeric vector containing 1 if study is TDT and 2 if
          case-control

     '_t' a numeric vector containing counts of alleles transmitted in
          TDT study

     '_n_t' a numeric vector containing counts of alleles not transmitted
          in TDT study

     '_c_a_s_e_r_i_s_k' a numeric vector containing counts of risk alleles in
          cases

     '_c_o_n_t_r_o_l_r_i_s_k' a numeric vector containing counts of risk alleles
          in controls

     '_c_a_s_e_n_o_t_r_i_s_k' a numeric vector containing counts of non-risk
          alleles in cases

     '_c_o_n_t_r_o_l_n_o_t_r_i_s_k' a numeric vector containing counts of non-risk
          alleles in controls

_D_e_t_a_i_l_s:

     The header must be part of the file and either 0 or NA must be
     included for data not relevant for the particular study.  For
     example, using a TDT study the caserisk, controlrisk, casenotrisk
     and controlnotrisk must have values of either 0 or NA.

_A_u_t_h_o_r(_s):

     Kristin K. Nicodemus, kristin.nicodemus@well.ox.ac.uk

_S_e_e _A_l_s_o:

     'catmap.forest', 'catmap.sense', 'catmap.cumulative',
     'catmap.funnel'.

_E_x_a_m_p_l_e_s:

     data(catmapdata)

