gapply {nlme} | R Documentation

## Apply a Function by Groups

### Description

Applies the function to the distinct sets of rows of the data frame defined by `groups`.

### Usage

    gapply(object, which, FUN, form, level, groups, ...)

### Arguments

`object` | an object to which the function will be applied - usually a `groupedData` object or a `data.frame`. Must inherit from class `data.frame`.
`which` | an optional character or positive integer vector specifying which columns of `object` should be used with `FUN`. Defaults to all columns in `object`.
`FUN` | function to apply to the distinct sets of rows of the data frame `object` defined by the values of `groups`.
`form` | an optional one-sided formula that defines the groups. When this formula is given the right-hand side is evaluated in `object`, converted to a factor if necessary, and the unique levels are used to define the groups. Defaults to `formula(object)`.
`level` | an optional positive integer giving the level of grouping to be used in an object with multiple nested grouping levels. Defaults to the highest or innermost level of grouping.
`groups` | an optional factor that will be used to split the rows into groups. Defaults to `getGroups(object, form, level)`.
`...` | optional additional arguments to the summary function `FUN`. Often it is helpful to specify `na.rm = TRUE`.

### Value

Returns a data frame with as many rows as there are levels in the `groups` argument.

### Author(s)

Jose Pinheiro Jose.Pinheiro@pharma.novartis.com and Douglas Bates bates@stat.wisc.edu

### References

Pinheiro, J.C., and Bates, D.M. (2000) "Mixed-Effects Models in S and S-PLUS", Springer, esp. sec. 3.4.

### See Also

`gsummary`

### Examples

    ## Find number of non-missing "conc" observations for each Subject
    gapply( Phenobarb, FUN = function(x) sum(!is.na(x$conc)) )

    # Pinheiro and Bates, p. 127
    table( gapply(Quinidine, "conc", function(x) sum(!is.na(x))) )
    changeRecords <- gapply( Quinidine, FUN = function(frm)
        any(is.na(frm[["conc"]]) & is.na(frm[["dose"]])) )

[Package nlme version 3.1-86 Index]