cluster                package:pbatR                R Documentation

_C_l_u_s_t_e_r _r_e_s_u_l_t _f_u_n_c_t_i_o_n_s

_D_e_s_c_r_i_p_t_i_o_n:

     Options when 'clusterRefresh' has been set to 0 (so that the
     current process is batched). See 'pbat.set' for details.

     is.finished() returns if PBAT execution has terminated.

     pbat.load() loads in PBAT output.

     pbat.concatenate() concatenates output files (without reading them
     into an R object).

_U_s_a_g_e:

     is.finished( pbatObj=NULL, clean=TRUE )
     pbat.load( pbatObj=NULL )
     pbat.concatenate( pbatObj=NULL, filename="myResults.txt", clean=FALSE )

_A_r_g_u_m_e_n_t_s:

 pbatObj: 'pbat' object (result of pbat.m, pbat.obj, pbat.files). If
          NULL / left empty, then the results are taken from what was
          run in the GUI interface. 

   clean: _pbat.load_:  If TRUE it will remove intermediate files that
          setup the job submission interface (but no other results, and
          not the command-files sent to pbat); see also pbat.clean.  If
          FALSE, nothing else is done.  NOTE, when TRUE (which is the
          default), if you run this more than once, you will get TRUE
          only once, and then FALSE the rest of the times.

          _pbat.concatenate_:  If clean is TRUE, then output that went
          into the concatenated file will be deleted.  Default is
          FALSE, as this has been a primary area of continual changes
          in PBAT, and so you may not want to do this until you have
          checked the output. 

filename: output filename

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.biostat.harvard.edu/~clange/default.htm>

     <URL: http://www.people.fas.harvard.edu/~tjhoffm/pbatR.html>

_S_e_e _A_l_s_o:

     'pbat.set'

     'pbat'

