plot.qb.pairloci {qtlbim} | R Documentation

## Summaries of epistatic pairs of loci.

### Description

Summaries and detailed scatterplot showing all MCMC samples for epistatic pairs for selected chromosomes.

### Usage

    qb.pairloci(qbObject, chr)
    ## S3 method for class 'qb.pairloci':
    plot(x, main, cex = 0.75, ... )
    ## S3 method for class 'qb.pairloci':
    print(x, ... )
    ## S3 method for class 'qb.pairloci':
    summary(object, ... )

### Arguments

`qbObject` | Object of class `qb`.
`object` | Object of class `qb.pairloci`.
`x` | Object of class `qb.pairloci`.
`chr` | Identifiers for one or two chromosomes.
`main` | Main title for plot.
`cex` | Character expansion of plot symbols.
`...` | Parameters to methods.

### Details

Find pairs of loci in MCMC samples. Produce scatter plot with generic `plot` or show numerical `summary`. The plot provides position detail complementary to `qb.multloci` and `qb.scantwo`.

### Author(s)

Brian S. Yandell, yandell@stat.wisc.edu

### References

http://www.qtlbim.org

### See Also

`plot.qb`, `qb.scantwo`, `qb.multloci`

### Examples

    tmpar <- par(mfrow = c(2,2))
    temp <- qb.pairloci(qbExample, c(1,2))
    summary(temp)
    plot(temp)
    temp <- qb.pairloci(qbExample, c(1,3))
    summary(temp)
    plot(temp)
    par(tmpar)

[Package qtlbim version 1.6.5 Index]