plot.qb.multloci {qtlbim} | R Documentation

## Summaries of multiple loci on a chromosome.

### Description

Summaries and detailed scatterplot showing all loci found in MCMC samples for a chromosome.

### Usage

    qb.multloci(qbObject, chr)
    ## S3 method for class 'qb.multloci':
    plot(x, amount = 0.75, cex, ... )
    ## S3 method for class 'qb.multloci':
    print(x, ... )
    ## S3 method for class 'qb.multloci':
    summary(object, ... )

### Arguments

`qbObject` | Object of class `qb`.
`object` | Object of class `qb.multloci`.
`x` | Object of class `qb.multloci`.
`chr` | Identifier for one chromosome.
`amount` | Amount to `jitter` points.
`cex` | Character expansion of plot symbols.
`...` | Parameters to methods.

### Details

Find multiple loci in MCMC samples for chromosome `chr`. Produce scatter plot, density plots and histogram of counts with generic `plot` or show numerical `summary`. The plot provides position detail complementary to `plot.qb.scantwo`.

### Author(s)

Brian S. Yandell, yandell@stat.wisc.edu

### References

http://www.qtlbim.org

### See Also

`plot.qb`, `qb.scantwo`

### Examples

    temp <- qb.multloci(qbExample, 1)
    summary(temp)
    plot(temp)

[Package qtlbim version 1.6.5 Index]