qb.slicetwo {qtlbim} | R Documentation

## Slices for epistatic pairs.

### Description

These routines refine QTL positions for epistatic pairs and show plots to reveal the nature of epistasis.

### Usage

    qb.slicetwo(qbObject, chr, pos, type = "2logBF", width = 10)
    ## S3 method for class 'qb.slicetwo':
    summary(object, ...)
    ## S3 method for class 'qb.slicetwo':
    print(x, ...)
    ## S3 method for class 'qb.slicetwo':
    plot(x, byrow = TRUE, figs, auto.par = TRUE, ...)

### Arguments

`qbObject` | Object of class `qb`.
`object` | Object of class `qb.slicetwo`.
`x` | Object of class `qb.slicetwo`.
`chr` | Chromosome vector.
`pos` | Position vector corresponding to `chr`.
`type` | Type of profile scan; see `qb.scanone`.
`width` | Width of slice.
`byrow` | Arrange plots by row (for slides) if `TRUE`.
`figs` | Plot only selected figures. Full set of `c("profile", "effects", "cellmean", "effectplot")` is default.
`auto.par` | Automatic setting of plot parameters for multiple plots if `TRUE`.
`...` | Extra plot options.

### Author(s)

Brian S. Yandell, yandell@stat.wisc.edu

### References

http://www.qtlbim.org

### See Also

`qb.scantwo`, `qb.sliceone`

### Examples

    temp <- qb.slicetwo(qbExample, chr = c(1,2), pos = c(45,12))
    summary(temp)
    plot(temp)

[Package qtlbim version 1.6.5 Index]