plot.qb.pairloci           package:qtlbim           R Documentation

_S_u_m_m_a_r_i_e_s _o_f _e_p_i_s_t_a_t_i_c _p_a_i_r_s _o_f _l_o_c_i.

_D_e_s_c_r_i_p_t_i_o_n:

     Summaries and detailed scatterplot showing all MCMC samples for
     epistatic pairs for selected chromosomes.

_U_s_a_g_e:

     qb.pairloci(qbObject, chr)
     ## S3 method for class 'qb.pairloci':
     plot(x, main, cex = 0.75, ... )
     ## S3 method for class 'qb.pairloci':
     print(x, ... )
     ## S3 method for class 'qb.pairloci':
     summary(object, ... )

_A_r_g_u_m_e_n_t_s:

qbObject: Object of class 'qb'.

  object: Object of class 'qb.pairloci'.

       x: Object of class 'qb.pairloci'.

     chr: Identifiers for one or two chromosomes.

    main: Main title for plot.

     cex: Character expansion of plot symbols.

     ...: Parameters to methods.

_D_e_t_a_i_l_s:

     Find pairs of loci in MCMC samples. Produce scatter plot with
     generic 'plot' or show numerical 'summary'. The plot provides
     position detail complementary to 'qb.multloci' and 'qb.scantwo'.

_A_u_t_h_o_r(_s):

     Brian S. Yandell, yandell@stat.wisc.edu

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.qtlbim.org>

_S_e_e _A_l_s_o:

     'plot.qb', 'qb.scantwo', 'qb.multloci'

_E_x_a_m_p_l_e_s:

     tmpar <- par(mfrow = c(2,2))
     temp <- qb.pairloci(qbExample, c(1,2))
     summary(temp)
     plot(temp)
     temp <- qb.pairloci(qbExample, c(1,3))
     summary(temp)
     plot(temp)
     par(tmpar)

