| sendimage {sendplot} | R Documentation |
This function is a wrapper to sendplot that will create a single interactive image
sendimage(plot.call,
x, y, z,
z.value="value",
x.lbls = NA,y.lbls=NA,xy.lbls=NA,
mai=NA, mai.prc=FALSE,plt.extras=NA,
bound.pt=TRUE, source.plot=NA,
paint=TRUE, img.prog=NA,
resize="800x1100",
ps.paper="letter",ps.width=8,ps.height=11,
fname.root="test",dir="./",header="v2",
up.left=c(188,103),low.right=c(648,912),
spot.radius=10)
plot.call |
character vector containing single plot call |
x |
vector of x locations for interactive points |
y |
vector of y locations for interactive points |
z |
vector of z values for image call |
z.value |
character vector indicating the label for what the z argument holds. |
x.lbls |
data frame of n x m which contatins values relating to the x axis of the plot call. n should be the length of the x argument. m columns contains information regarding sample. This information is displayed in the interactive plot window |
y.lbls |
data frame of n x m which contatins values relating to the y axis of the plot. n should be the length of the y argument. m columns contains information regarding sample. This information is displayed in the interactive plot window |
xy.lbls |
list of matricies. All matricies should be of n x m where n is the length of y and m is the length of x. This information is displayed in the interactive plot window |
mai |
margins for each side of the plot.If NA uses default margins |
plt.extras |
List of additional plotting calls that should be executed for the plot. |
mai.prc |
logical indicating if mai mat values are percentages or hard coded values. If mai.proc is T, indicates percentage. |
bound.pt |
logical indicating if red points should be plotted to aid in finding the upper left and lower right coordinates. If bound.pt is FALSE, indicates that up.left and low.right arguments are correct and will make the html file |
source.plot |
Indicates whether application should make a postscript file and then convert to png file, or if the png file should be made directly. This value is either ps, png, or NA. If NA the operating system is checked and the appropraite file format is output. Unix has a convert function that can convert a ps file to png file; we by default use this setup because we feel the postscript file maintains better quality. So on unix/linux systems if source.plot is NA, source.plot will be set to ps. Windows does not have this option, for this reason source.plot will be set to png if left NA |
paint |
logical indicating if application should automatically open .png file for the user to view .png file and/or to retrieve needed bounding values of the plot call |
img.prog |
If paint is TRUE, the command line call that will open a program to view .png file to retrieve pixil locations of interactive plot bounds. If this is left NA, the operating system is checked and a default program is used. For unix the default application is kolourpaint and for windows it is microsoft paint (mspaint) |
resize |
character indicating resize value. The postscript version will be resized to this value when converted to .png. |
ps.paper |
postscript paper argument |
ps.width |
poscript width argument |
ps.height |
postscript height argument |
fname.root |
Base name to use for posctscript, .png, and html file names. |
dir |
directory path to where files should be created |
header |
May either be v1 or v2. This determines which tooltip header will be in the html file. Each version has different features or works well with different web browsers. see sp.header for details. |
up.left |
The x and y value in pixels of the upper left hand corner of the plot call |
low.right |
The x and y value in pixels of the lower right hand corner of the plot call. |
spot.radius |
radius of circle in pixels indicating area that will be interactive around the center of interactive points |
This function is a wrapper for the sendplot function to create a single interacive image. see sendplot for more information.
The plot call, x values, y values and z values will need to be specified. The graph created with the plot.call argument will be interactive in a web browser. The function uses information regarding x and y values to make a mapping that javascript can utilize. In order to map correctly, the x and y values need to be converted into pixel values. This is performed automatically, however it requires the knowledge of the upper left and lower right pixel coordinates of the bounding box of the image. These pixel coordinates change when the postscript file is converted into a .png file if the resize option is used. The .png file must be opened in some image viewer that allows the user to retrieve pixel coordinates. There are two possible scenerios for making a png file:the png file may be made directly, or a postscript file may be made first that then must be converted into a png file. We recommend the later because we feel it maintains better clarity and quality. Whether the ps or png file is made is controlled by source.plot. source.plot may be ps, png, or NA. If ps, the postscript file is created; if this option is chosen and the operating system is unix/linux there is an automatic call to the convert function to convert the postscript into a png file. If png, the .png file is created. If source.plot is NA, the operating system is checked and the appropriate file format is generated. By default, if the operating system is unix/linux, the postscript is created and then converted to png. If the operating system is windows or mac, the png file is created directly. If the ps option is used on windows or mac, it is up to the user to correctly convert the postscript to a png file format. As mentioned above, once the png file is created the pixil locations of the bounding box must be known. If paint is TRUE, the png file is openned with the program given by img.prog. If img.prog is NA, the application used to view the image is determined by the operating system. In windows,img.prog is mspaint which will open the .png file in microsoft paint. In linux/unix, img.prog is kolourpaint. img.prog may be any command line call to a graphics program for viewing .png files. As mentioned above, once the png file is created the pixil locations of the bounding box must be known. If paint is TRUE, the png file is openned with the program given by img.prog. If img.prog is NA, the application used to view the image is determined by the operating system. In windows,img.prog is mspaint which will open the .png file in microsoft paint. In linux/unix, img.prog is kolourpaint. img.prog may be any command line call to a graphics program for viewing .png files.If bound.pt is T, two blue points will appear in the image to indicate the edges of the bounding box. When the file is opened in kolourpaint or mspaint, the user need only to record the pixel location when the mouse hovers over these blue points (NOTE: in kolourpaint and mspaint the pixel location appears on the bottom of the window).When bound.pt is TRUE the function assumes that the user needs to find the pixel locations of the bounding box and will not make the html file. The interactive html file is only created when bound.pt is FALSE. Once the upper left and lower right values are recorded, the user should rerun the same function call but updating the up.left and low.right with the values retrieved and with bound.pt = FALSE. This results in an html with embedded javascript to be created. The user may open the html file in a web browser that has javascript capabilities; we recommended using mozilla firefox (NOTE: Internet Explorer currently does not support this function. Capability issues will be resolved in future releases). The information that appears when a point is scrolled over is controlled by the function arguments x.lbls, y.lbls, and xy.lbls. The information displayed can be from x specific information, y specific information, or information that is dependent upon both x and y. x.lbls is a data frame of x specific data. The number of rows should be equal to the number of x data points. There may be any number of columns. The names of the columns are used as the label in the display window. Likewise, y.lbls is a data frame of y specific data. The number of rows should be equal to the number of y data points. There may be any number of columns. The names of the columns are used as the label in the display window. xy.lbls however is a list of data frames. This data is dependent upon both x and y location. All data frames will be of the dimensions (length of y) X (length of x). There may be any number of data frames in the list. The name of the data frame, or the name in the list, is what is used as the label in the display window. The z value used to create the image is included automatically. Its label in the display window may be controlled by z.value. If this is not specified the default label is value.
Creates a static .ps and .png file, and an interactive html file
The interactive html plot currently only works in web browsers that implement java script.
The code used to create the javascript embedded in html file is a modified version of the javascript code or from the open source tooltip library. see reference links
Lori Shepherd
http://www.onlamp.com/pub/a/onlamp/2007/07/05/writing-advanced-javascript.html
http://www.walterzorn.com/tooltip/tooltip_e.htm
# load the library
library("sendplot")
# set up vectors x,y, and z
x = 1:4
y = 1:8
z = t(matrix(rnorm(32), ncol=4))
# create plot call for graph
plot.calls = "image(x=x, y=y, z=z)"
# run sendImage
# note: we have already figured out appropriate up.left and low.right
# values. if these were not known, the function should be run
# with bound.pt=T (and maybe kolourpaint=T) to find pixil
# locations
sendimage(plot.call = plot.calls, x=x, y=y, z=z,
up.left=c(100,99),low.right=c(738,917),
bound.pt=FALSE, source.plot=NA, paint=FALSE,
img.prog=NA,fname.root="testImg" )