LIMCaliforniaSediment          package:LIM          R Documentation

_L_i_n_e_a_r _i_n_v_e_r_s_e _m_o_d_e_l _s_p_e_c_i_f_i_c_a_t_i_o_n _f_o_r _t_h_e _S_a_n_t_a _M_o_n_i_c_a _B_a_s_i_n
_s_e_d_i_m_e_n_t _f_o_o_d _w_e_b

_D_e_s_c_r_i_p_t_i_o_n:

     Linear inverse model specification for the Santa Monica Basin
     (California) sediment food web  as in Eldridge and Jackson (1993).

     The Santa Monica Basin is a hypoxic-anoxic basin located near
     California.

     The model contains both chemical and biological species.

     The foodweb comprises 7 functional compartments and five external
     compartments, connected with 32 flows.

     Units of the flows are mg /m2/day

     The linear inverse model LIMCaliforniaSediment is generated from
     the file 'CaliforniaSediment.input' which can be found in
     subdirectory '/examples/FoodWeb' of the package directory

     In this subdirectory you will find many foodweb example input
     files

     These files can be read using 'Read' and their output processed by
     'Setup' which will produce a linear inverse problem specification
     similar to LIMCaliforniaSediment

_U_s_a_g_e:

     data(LIMCaliforniaSediment)

_F_o_r_m_a_t:

     a list of matrices, vectors, names and values that specify the
     linear inverse model problem.

     see the return value of 'Setup' for more information about this
     list

     A more complete description of this structures is in
     vignette("LIM")

_A_u_t_h_o_r(_s):

     Karline Soetaert <k.soetaert@nioo.knaw.nl> Dick van
     Oevelen<d.vanoevelen@nioo.knaw.nl>

_R_e_f_e_r_e_n_c_e_s:

     Eldridge, P.M., Jackson, G.A., 1993. Benthic trophic dynamics in
     California coastal basin and continental slope communities
     inferred using inverse analysis. Marine Ecology Progress Series
     99, 115-135.

_S_e_e _A_l_s_o:

     browseURL(paste(system.file(package="LIM"), "/examples/Foodweb/",
     sep=""))

     contains "CaliforniaSediment.input", the input file; read this
     with 'Setup'

     'LIMTakapoto', 'LIMRigaSummer' and many others

_E_x_a_m_p_l_e_s:

     CaliforniaSediment <- Flowmatrix(LIMCaliforniaSediment)
     plotweb(CaliforniaSediment,main="Santa Monica Basin Benthic web",
             sub="mgN/m2/day",lab.size=0.8)
     xr <- LIMCaliforniaSediment$NUnknowns
     i1 <- 1:(xr/2)
     i2 <- (xr/2+1):xr
     Plotranges(LIMCaliforniaSediment,index=i1,lab.cex=0.7,sub="*=unbounded",
             main="Santa Monica Basin Benthic web, Flowranges - part1")
     ## Not run: 
     Plotranges(LIMCaliforniaSediment,index=i2,lab.cex=0.7,sub="*=unbounded",
             main="Santa Monica Basin Benthic web, Flowranges - part2")
     ## End(Not run)

