LIMCoralRockall             package:LIM             R Documentation

_L_i_n_e_a_r _i_n_v_e_r_s_e _m_o_d_e_l _s_p_e_c_i_f_i_c_a_t_i_o_n _f_o_r _t_h_e _D_e_e_p-_w_a_t_e_r _C_o_r_a_l _f_o_o_d _w_e_b
_a_t _R_o_c_k_a_l_l _B_a_n_k

_D_e_s_c_r_i_p_t_i_o_n:

     Linear inverse model specification for the deep-water coral
     ecosystem at Rockall Bank, North-East Atlantic. See van Oevelen et
     al. (2009)

     Units of the flows are mmol C/m2/day

     The linear inverse model LIMCoralRockall is generated from the
     file 'CWCRockall.input' which can be found in subdirectory
     '/examples/FoodWeb' of the package directory

_U_s_a_g_e:

     data(LIMCoralRockall)

_F_o_r_m_a_t:

     a list of matrices, vectors, names and values that specify the
     linear inverse model problem.

     see the return value of 'Setup' for more information about this
     list

     A more complete description of this structure is in
     vignette("LIM")

_A_u_t_h_o_r(_s):

     Dick van Oevelen<d.vanoevelen@nioo.knaw.nl>

     Karline Soetaert <k.soetaert@nioo.knaw.nl>

_R_e_f_e_r_e_n_c_e_s:

     van Oevelen, Dick, Gerard Duineveld, Marc Lavaleye, Furu Mienis,
     Karline Soetaert, and Carlo H. R. Heip, 2009.

     The cold-water coral community as hotspot of carbon cycling on
     continental margins: A food web analysis from Rockall Bank
     (northeast Atlantic). Limnology and Oceanography, in press.

_S_e_e _A_l_s_o:

     browseURL(paste(system.file(package="LIM"), "/examples/Foodweb/",
     sep=""))

     contains "CWCRockall.input", the input file; read this with
     'Setup'

     'LIMTakapoto', 'LIMRigaSummer' and many others

_E_x_a_m_p_l_e_s:

     Coral <- Flowmatrix(LIMCoralRockall)

     plotweb(Coral,main="Deep Water Coral Foodweb, Rockall Bank",
             sub="mmolC/m2/day",lab.size=0.8)

     ## Not run: 
     xr <- LIMCoralRockall$NUnknowns
     i1 <- 1:(xr/2)
     i2 <- (xr/2+1):xr

     pm <- par(mfrow=c(1,1))
     Simplest <- Ldei(LIMCoralRockall)$X
     Ranges <- Xranges(LIMCoralRockall)
     Plotranges(Ranges[i1,1],Ranges[i1,2],Simplest[i1],lab.cex=0.7,
             main="Deep Water Coral - ranges part 1")

     Plotranges(Ranges[i2,1],Ranges[i2,2],Simplest[i2],lab.cex=0.7,
             main="Deep Water Coral - ranges part 2")
     par(mfrow=pm)
     ## End(Not run)

