GdataPed {MasterBayes} | R Documentation |
An object containing genotype data and the categories over which error rates may vary.
GdataPed(G, id = NULL, categories = NULL, perlocus=FALSE, marker.type="MSW")
G |
a list of genotype objects for each locus, or a data.frame to be coerced using genotype.list |
id |
a vector of individual identifiers associated with each genotype, individuals can have more than one observed genotype. If G is a data.frame to be coerced and has a column name id , this will be used. |
categories |
an optional vector indicating subsets of genotypes that have different error rates. If G is a data.frame to be coerced and has a column name categories , this will be used. |
perlocus |
if TRUE different error rates are estimated for each locus |
marker.type |
"MSW" or "MSC" for co-dominant markers with Wang's (2004) model of genotyping error or CERVUS's model of genotyping error (Kalinowski, 2006; Marshall, 1998) or "AFLP" for dominant markers (Hadfield, 2009). |
Jarrod Hadfield j.hadfield@ed.ac.uk
Marshall, T. C. et al (1998) Molecular Ecology 7 5 639-655 Kalinowski S.T. et al (2007) Molecular Ecology 16 5 1099-1106 Hadfield J. D. et al (2009) in prep
## Not run: data(WarblerG) GdP<-GdataPed(WarblerG) ## End(Not run)