R: Link Object Files to Make an Executable

linkAD {PBSadmb}

R Documentation

Link Object Files to Make an Executable

Description

Links the binary object file 'prefix'.o to the ADMB libraries and produces the executable file 'prefix'.exe.

Usage

linkAD(prefix, raneff=FALSE, safe=TRUE, logfile=TRUE, add=TRUE, 
       verbose=TRUE, comp="GCC")

Arguments

`prefix`	string name prefix of the ADMB project (e.g., `"vonb"`).
`raneff`	logical: use the random effects model, otherwise use the normal model.
`safe`	logical: if `TRUE`, use safe mode with bounds checking on all array objects, otherwise use optimized mode for fastest execution.
`logfile`	logical: if `TRUE`, create a log file of the messages from the shell call.
`add`	logical: if `TRUE`, append shell call messages to an exsiting log file.
`verbose`	logical: if `TRUE`, report the shell call an its messages to the R console.
`comp`	string: compiler to use - "GCC" is only currently supported

Details

This function uses the C++ comiler declared in .ADopts. If logfile=TRUE, any errors will appear in 'prefix'.log. If verbose=TRUE, they will appear in the R console.

Value

Invisibly returns the shell call and its messages.

Note

A wrapper function that can be called from a GUI exists as .win.linkAD.

Author(s)

Jon T. Schnute, Pacific Biological Station, Nanaimo BC, Canada