AromaMicroarrayDataFile      package:aroma.core      R Documentation

_T_h_e _a_b_s_t_r_a_c_t _A_r_o_m_a_M_i_c_r_o_a_r_r_a_y_D_a_t_a_F_i_l_e _c_l_a_s_s

_D_e_s_c_r_i_p_t_i_o_n:

     Package:  aroma.core 
      *Class AromaMicroarrayDataFile*

     'Object'
      '~~|'
      '~~+--''FullNameInterface'
      '~~~~~~~|'
      '~~~~~~~+--''GenericDataFile'
      '~~~~~~~~~~~~|'
      '~~~~~~~~~~~~+--'_'AromaMicroarrayDataFile'_

     *Directly known subclasses:*


     public abstract static class *AromaMicroarrayDataFile*
      extends _GenericDataFile_

     An AromaMicroarrayDataFile object represents a single microarray
     data file. Each such file originates from a specific chip type on
     a given platform.

_U_s_a_g_e:

     AromaMicroarrayDataFile(...)

_A_r_g_u_m_e_n_t_s:

     ...: Arguments passed to 'GenericDataFile'.

_F_i_e_l_d_s _a_n_d _M_e_t_h_o_d_s:

     *Methods:*

         'getChipType'    -
         'getPlatform'    -
         'getXAM'         -
         'isAverageFile'  -

     *Methods inherited from GenericDataFile*:
      compareChecksum, copyTo, equals, fromFile, getAlias,
     getAttribute, getAttributes, getChecksum, getCreatedOn,
     getDefaultFullName, getExtension, getExtensionPattern,
     getFilename, getFilenameExtension, getFileSize, getFileType,
     getLastAccessedOn, getLastModifiedOn, getOutputExtension, getPath,
     getPathname, gunzip, gzip, hasBeenModified, isFile, readChecksum,
     renameTo, renameToUpperCaseExt, setAlias, setAttribute,
     setAttributes, setAttributesBy, setAttributesByTags,
     setExtensionPattern, testAttributes, validateChecksum,
     writeChecksum

     *Methods inherited from FullNameInterface*:
      appendFullNameTranslator, appendFullNameTranslatorBycharacter,
     appendFullNameTranslatorByfunction,
     appendFullNameTranslatorBylist, appendFullNameTranslatorByNULL,
     clearFullNameTranslator, clearListOfFullNameTranslators,
     getDefaultFullName, getFullName, getFullNameTranslator,
     getListOfFullNameTranslators, getName, getTags, hasTag, hasTags,
     setFullName, setFullNameTranslator, setListOfFullNameTranslators,
     setName, setTags, updateFullName

     *Methods inherited from Object*:
      asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally,
     clearCache, clone, detach, equals, extend, finalize, gc,
     getEnvironment, getFields, getInstantiationTime,
     getStaticInstance, hasField, hashCode, ll, load, objectSize,
     print, registerFinalizer, save

_A_u_t_h_o_r(_s):

     Henrik Bengtsson (<URL: http://www.braju.com/R/>)

_S_e_e _A_l_s_o:

     An object of this class is typically part of an
     'AromaMicroarrayDataSet'.

