AromaMicroarrayDataSet      package:aroma.core      R Documentation

_T_h_e _A_r_o_m_a_M_i_c_r_o_a_r_r_a_y_D_a_t_a_S_e_t _c_l_a_s_s

_D_e_s_c_r_i_p_t_i_o_n:

     Package:  aroma.core 
      *Class AromaMicroarrayDataSet*

     'Object'
      '~~|'
      '~~+--''FullNameInterface'
      '~~~~~~~|'
      '~~~~~~~+--''GenericDataFileSet'
      '~~~~~~~~~~~~|'
      '~~~~~~~~~~~~+--'_'AromaMicroarrayDataSet'_

     *Directly known subclasses:*


     public abstract static class *AromaMicroarrayDataSet*
      extends GenericDataFileSet

     An AromaMicroarrayDataSet object represents a set of
     'AromaMicroarrayDataFile's with _identical_ chip types.

_U_s_a_g_e:

     AromaMicroarrayDataSet(files=NULL, ...)

_A_r_g_u_m_e_n_t_s:

   files: A 'list' of 'AromaMicroarrayDataFile':s.

     ...: Arguments passed to 'GenericDataFileSet'.

_F_i_e_l_d_s _a_n_d _M_e_t_h_o_d_s:

     *Methods:*

         'as.AromaMicroarrayDataSetList'   -
         'as.AromaMicroarrayDataSetTuple'  -
         'getAverageFile'                  -
         'getChipType'                     -
         'getPlatform'                     -
         'nbrOfArrays'                     -

     *Methods inherited from GenericDataFileSet*:
      append, appendFiles, appendFullNamesTranslator,
     appendFullNamesTranslatorByfunction,
     appendFullNamesTranslatorBylist, appendFullNamesTranslatorByNULL,
     as.list, byName, byPath, clearCache, clearFullNamesTranslator,
     copyTo, equals, extract, findByName, fromFiles, getAlias,
     getDefaultFullName, getFile, getFileClass, getFileSize,
     getFullNames, getNames, getPath, getPathnames, hasFile, indexOf,
     lapply, nbrOfFiles, sapply, seq, setAlias, setFullNamesTranslator,
     update2, updateFullName, updateFullNames, validate

     *Methods inherited from FullNameInterface*:
      appendFullNameTranslator, appendFullNameTranslatorBycharacter,
     appendFullNameTranslatorByfunction,
     appendFullNameTranslatorBylist, appendFullNameTranslatorByNULL,
     clearFullNameTranslator, clearListOfFullNameTranslators,
     getDefaultFullName, getFullName, getFullNameTranslator,
     getListOfFullNameTranslators, getName, getTags, hasTag, hasTags,
     setFullName, setFullNameTranslator, setListOfFullNameTranslators,
     setName, setTags, updateFullName

     *Methods inherited from Object*:
      asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally,
     clearCache, clone, detach, equals, extend, finalize, gc,
     getEnvironment, getFields, getInstantiationTime,
     getStaticInstance, hasField, hashCode, ll, load, objectSize,
     print, registerFinalizer, save

_A_u_t_h_o_r(_s):

     Henrik Bengtsson (<URL: http://www.braju.com/R/>)

