AromaTabularBinaryFile      package:aroma.core      R Documentation

_T_h_e _A_r_o_m_a_T_a_b_u_l_a_r_B_i_n_a_r_y_F_i_l_e _c_l_a_s_s

_D_e_s_c_r_i_p_t_i_o_n:

     Package:  aroma.core 
      *Class AromaTabularBinaryFile*

     'Object'
      '~~|'
      '~~+--''FullNameInterface'
      '~~~~~~~|'
      '~~~~~~~+--''GenericDataFile'
      '~~~~~~~~~~~~|'
      '~~~~~~~~~~~~+--''GenericTabularFile'
      '~~~~~~~~~~~~~~~~~|'
      '~~~~~~~~~~~~~~~~~+--'_'AromaTabularBinaryFile'_

     *Directly known subclasses:*
      AromaCellPositionFile, AromaCellSequenceFile,
     _AromaCellTabularBinaryFile_, _AromaMicroarrayTabularBinaryFile_,
     AromaUflFile, AromaUgpFile, AromaUnitCallFile,
     _AromaUnitChromosomeTabularBinaryFile_,
     AromaUnitFracBCnBinaryFile, AromaUnitGenotypeCallFile,
     AromaUnitSignalBinaryFile, _AromaUnitTabularBinaryFile_,
     AromaUnitTotalCnBinaryFile, AromaUnitTypesFile

     public abstract static class *AromaTabularBinaryFile*
      extends _GenericTabularFile_

     A AromaTabularBinaryFile represents a file with a binary format.
     It has a well defined header, a data section, and a footer.

_U_s_a_g_e:

     AromaTabularBinaryFile(...)

_A_r_g_u_m_e_n_t_s:

     ...: Arguments passed to 'GenericTabularFile'.

_F_i_e_l_d_s _a_n_d _M_e_t_h_o_d_s:

     *Methods:*

         '['                  -
         '[['                 -
         '[<-'                -
         'allocate'           Creates an AromaTabularBinaryFile.
         'as.character'       -
         'colMeans'           -
         'colMedians'         -
         'colStats'           -
         'colSums'            -
         'dimnames<-'         -
         'getBytesPerColumn'  -
         'getColClasses'      -
         'getColumnNames'     -
         'importFrom'         -
         'lapply'             -
         'nbrOfColumns'       -
         'nbrOfRows'          -
         'readColumns'        -
         'readFooter'         Reads the file footer in XML format into a named nested list.
         'subset'             -
         'summary'            -
         'writeFooter'        Writes a named nested list to the file footer in XML format.

     *Methods inherited from GenericTabularFile*:
      as.character, dim, extractMatrix, getColumnNames,
     getColumnNameTranslator, nbrOfColumns, nbrOfRows, readColumns,
     readDataFrame, setColumnNameTranslator, translateColumnNames

     *Methods inherited from GenericDataFile*:
      compareChecksum, copyTo, equals, fromFile, getAlias,
     getAttribute, getAttributes, getChecksum, getCreatedOn,
     getDefaultFullName, getExtension, getExtensionPattern,
     getFilename, getFilenameExtension, getFileSize, getFileType,
     getLastAccessedOn, getLastModifiedOn, getOutputExtension, getPath,
     getPathname, gunzip, gzip, hasBeenModified, isFile, readChecksum,
     renameTo, renameToUpperCaseExt, setAlias, setAttribute,
     setAttributes, setAttributesBy, setAttributesByTags,
     setExtensionPattern, testAttributes, validateChecksum,
     writeChecksum

     *Methods inherited from FullNameInterface*:
      appendFullNameTranslator, appendFullNameTranslatorBycharacter,
     appendFullNameTranslatorByfunction,
     appendFullNameTranslatorBylist, appendFullNameTranslatorByNULL,
     clearFullNameTranslator, clearListOfFullNameTranslators,
     getDefaultFullName, getFullName, getFullNameTranslator,
     getListOfFullNameTranslators, getName, getTags, hasTag, hasTags,
     setFullName, setFullNameTranslator, setListOfFullNameTranslators,
     setName, setTags, updateFullName

     *Methods inherited from Object*:
      asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally,
     clearCache, clone, detach, equals, extend, finalize, gc,
     getEnvironment, getFields, getInstantiationTime,
     getStaticInstance, hasField, hashCode, ll, load, objectSize,
     print, registerFinalizer, save

_A_u_t_h_o_r(_s):

     Henrik Bengtsson (<URL: http://www.braju.com/R/>)

_S_e_e _A_l_s_o:

     'GenericDataFile'.

