AromaTransform          package:aroma.core          R Documentation

_T_h_e _A_r_o_m_a_T_r_a_n_s_f_o_r_m _c_l_a_s_s

_D_e_s_c_r_i_p_t_i_o_n:

     Package:  aroma.core 
      *Class AromaTransform*

     'Object'
      '~~|'
      '~~+--'_'AromaTransform'_

     *Directly known subclasses:*


     public abstract static class *AromaTransform*
      extends Object

     This abstract class represents a transform (algorithm/operator)
     that transforms data.  A transform has an input data set, which is
     transformed into an output data set.

_U_s_a_g_e:

     AromaTransform(dataSet=NULL, tags="*", ..., .reqSetClass="AromaMicroarrayDataSet")

_A_r_g_u_m_e_n_t_s:

 dataSet: The input data set as an 'AromaMicroarrayDataSet'.

    tags: A 'character' 'vector' of tags to be appended to the tags of
          the input data set.

     ...: Not used.

.reqSetClass: Internal argument.

_D_e_t_a_i_l_s:

     Subclasses must implement the 'process()' method.

_F_i_e_l_d_s _a_n_d _M_e_t_h_o_d_s:

     *Methods:*

         'getFullName'       Gets the full name of the output data set.
         'getInputDataSet'   Gets the input data set.
         'getName'           Gets the name of the output data set.
         'getOutputDataSet'  Gets the transformed data set.
         'getPath'           Gets the path of the output data set.
         'getTags'           Gets the tags of the output data set.
         'isDone'            Checks if the data set is processed or not.
         'process'           Processes the data set.
         'setTags'           -

     *Methods inherited from Object*:
      asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally,
     clearCache, clone, detach, equals, extend, finalize, gc,
     getEnvironment, getFields, getInstantiationTime,
     getStaticInstance, hasField, hashCode, ll, load, objectSize,
     print, registerFinalizer, save

_A_u_t_h_o_r(_s):

     Henrik Bengtsson (<URL: http://www.braju.com/R/>)

