printGeneListProfile       package:geneListPie       R Documentation

_P_r_i_n_t _t_h_e _p_r_o_f_i_l_i_n_g _r_e_s_u_l_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     Print the results from geneListProfile(). The printing format can
     be MSigDB or 2 column (Gene_Set, number) format, where Gene_Set is
     the name of a gene set and number is the number of overlapping
     genes between the gene list and the gene set. In the MSigDB format
     the output contains all the overlapping gene symbols. The output
     can be stdin or directed to a file.

_U_s_a_g_e:

     printGeneListProfile(r, file = "", format = NULL)

_A_r_g_u_m_e_n_t_s:

       r: profiling mapping results from geneListProfile 

    file: filename, default to stdin 

  format: "MSigDB" format or NULL 

_A_u_t_h_o_r(_s):

     Xutao Deng

