# Generalized Linear Mixed Models

## Documentation for package ‘glmmAK’ version 1.3-1

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

AKmiscel | Miscellaneous smaller functions
BPvalue | Univariate Bayesian P-value (pseudo-contour probability)
Cclayton | Copulas
cclayton | Copulas
Cgauss | Copulas
cgauss | Copulas
copula | Copulas
Cplackett | Copulas
cplackett | Copulas
cumlogit | Cumulative logit model for ordinal responses
cumlogitRE | Logit and cumulative logit model with random effects
cumlogitRE.predict | Prediction for logit and cumulative logit model with random effects
densplotAK | Probability density function estimate from MCMC output
dGMRF | Gaussian Markov random fields
dGMRF2 | Gaussian Markov random fields
dgspline1 | Density and random number generation from a univariate G-spline (penalized Gaussian mixture)
epileptic | Epileptic seizures
epilepticBC | Epileptic seizures, Breslow and Clayton transformed
glmmAK.files2coda | Conversion of sampled values into coda mcmc objects
GMRF | Gaussian Markov random fields
gspline1 | Density and random number generation from a univariate G-spline (penalized Gaussian mixture)
gspline2 | Density and random number generation from a bivariate G-spline (penalized Gaussian mixture)
logpoisson | Poisson log-linear regression model
logpoissonRE | Poisson log-linear regression with random effects
logpoissonRE.predict | Prediction for Poisson log-linear regression with random effects
maxPosterProb | G-spline utility
mfLand | Miscellaneous smaller functions
mfPort | Miscellaneous smaller functions
momentsGMRF | Gaussian Markov random fields
print.cumlogit | Cumulative logit model for ordinal responses
print.logpoisson | Poisson log-linear regression model
QuantileFun | Sample quantiles
rGMRF | Gaussian Markov random fields
rgspline1 | Density and random number generation from a univariate G-spline (penalized Gaussian mixture)
rgspline2 | Density and random number generation from a bivariate G-spline (penalized Gaussian mixture)
scanFH | Read Data Values
summary.cumlogit | Cumulative logit model for ordinal responses
summary.logpoisson | Poisson log-linear regression model
summaryGspline1 | Summary for a univariate G-spline (penalized Gaussian mixture)
summaryGspline2 | Summary for a bivariate G-spline (penalized Gaussian mixture)
toenail | Toenail infection