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@ARTICLE{Andersson04,
  author = {Andersson, H and Wijsman, J and Herman, P and Middelburg, J and Soetaert,
	K and Heip, C},
  title = { Respiration patterns in the deep ocean.},
  journal = {Geophysical Research Letters},
  year = { 2004},
  volume = { 31},
  pages = {LO3304}
}

@MANUAL{Matrix,
  title = {Matrix: A Matrix package for R},
  author = {Douglas Bates and Martin Maechler},
  year = {2008},
  note = {R package version 0.999375-9}
}

@BOOK{Caswell01,
  title = {Matrix population models: construction, analysis, and interpretation},
  publisher = {Sinauer, Sunderland},
  year = {2001},
  author = {Caswell, H},
  edition = {Second edition}
}

@ARTICLE{Hansen97,
  author = {Hansen, PJ and Bjornsen, PK and Hansen, BW},
  title = {Zooplankton grazing and growth: Scaling within the 2-2,000-mu m body
	size range.},
  journal = { Limnology and Oceanograpy},
  year = {1997},
  volume = {42},
  pages = { 687-704}
}

@ARTICLE{Hurlbert71,
  author = {Hurlbert, S H},
  title = {The nonconcept of species diversity: critique and alternative parameters},
  journal = {Ecology},
  year = {1971},
  volume = {52},
  pages = {577-586}
}

@MANUAL{Kuhnert05,
  title = {An introduction to R: software for statistical modelling \& computing},
  author = {Kuhnert, P and WN Venables},
  year = {2005},
  pages = {364},
  publisher = {CSIRO Australia},
  url = { www.r-project.org}
}

@INPROCEEDINGS{Leisch02,
  author = {Friedrich Leisch},
  title = {Sweave: Dynamic Generation of Statistical Reports Using Literate
	Data Analysis},
  booktitle = {Compstat 2002 - Proceedings in Computational Statistics},
  year = {2002},
  editor = {Wolfgang H{\"a}rdle and Bernd R{\"o}nz},
  pages = {575-580},
  publisher = {Physica Verlag, Heidelberg},
  note = {ISBN 3-7908-1517-9},
  url = {http://www.stat.uni-muenchen.de/~leisch/Sweave}
}

@ARTICLE{scatterplot3D,
  author = {Uwe Ligges and M Machler},
  title = {Scatterplot3d - an R Package for Visualizing Multivariate Data},
  journal = {Journal of Statistical Software},
  year = {2003},
  volume = {8(11)},
  pages = {1-20}
}

@ARTICLE{Lorenz63,
  author = {Lorenz, EN},
  title = {Deterministic non-periodic flows},
  journal = {J. Atmos. Sci},
  year = {1963},
  volume = {20},
  pages = {130-141}
}

@BOOK{Lotka25,
  title = {Elements of Physical Biology},
  publisher = {Williams \& Wilkins Co.},
  year = {1925},
  author = {Lotka, A J},
  address = {Baltimore}
}

@ARTICLE{Millero81,
  author = {Millero, FJ and Poisson, A},
  title = {International one-atmosphere equation of state for seawater},
  journal = {Deep-Sea Research},
  year = {1981},
  volume = {28(6)},
  pages = {625-629}
}

@MANUAL{seacarb,
  title = {seacarb: Calculates parameters of the seawater carbonate system},
  author = {Aurelien Proye and Jean-Pierre Gattuso and Jean-Marie Epitalon and
	Bernard Gentili and Jim Orr and Karline Soetaert},
  year = {2007},
  note = {R package version 1.2.3},
  url = {http://www.obs-vlfr.fr/~gattuso/seacarb.php}
}

@MANUAL{R2008,
  title = {\proglang{R}: A Language and Environment for Statistical Computing},
  author = {{R Development Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2008},
  note = {{ISBN} 3-900051-07-0},
  url = {http://www.R-project.org}
}

@ARTICLE{Sanders68,
  author = {Sanders, HL},
  title = {Marine benthic diversity: a comparative study},
  journal = {Amercian Naturalist},
  year = {1968},
  volume = {102},
  pages = {243-282}
}

@MANUAL{rootSolve,
  title = {rootSolve: Nonlinear root finding, equilibrium and steady-state analysis
	of ordinary differential equations},
  author = {Karline Soetaert},
  year = {2009},
  note = {R package version 1.4}
}

@MANUAL{lecture,
  title = {using R for scientific computing},
  author = {Karline Soetaert},
  address = {NIOO-CEME, Yerseke},
  year = {2008},
  pages = {44}
}

@ARTICLE{Soetaert91,
  author = {Soetaert, K and Heip, C and Vincx, M },
  title = {Diversity of nematode assemblages along a mediterranean deep-sea
	transect},
  journal = {Marine Ecology Progress Series},
  year = {1991},
  volume = {75},
  pages = {275-282}
}

@BOOK{Soetaert08,
  title = {A Practical Guide to Ecological Modelling. Using \R as a Simulation
	Platform},
  publisher = {Springer},
  year = {2009},
  author = {Soetaert, K and Herman, P M J},
  pages = {372},
  note = {ISBN 978-1-4020-8623-6}
}

@MANUAL{LIM,
  title = {LIM: Linear Inverse Model examples and solution methods.},
  author = {Karline Soetaert and Dick van Oevelen},
  year = {2008},
  note = {R package version 1.1}
}

@MANUAL{marelac,
  title = {marelac: Constants, conversion factors, utilities for the MArine,
	Riverine, Estuarine, LAcustrine and Coastal sciences},
  author = {Karline Soetaert and Thomas Petzoldt and Filip Meysman},
  year = {2009},
  note = {R package version 2.0}
}

@MANUAL{marelacTeaching,
  title = {marelacTeaching: Datasets and tutorials for use in the MArine, Riverine,
	Estuarine, LAcustrine and Coastal sciences},
  author = {Karline Soetaert and Filip Meysman},
  year = {2009},
  note = {R package version 1.1}
}

@MANUAL{deSolve,
  title = {deSolve: General solvers for initial value problems of ordinary differential
	equations (ODE), partial differential equations (PDE) and differential
	algebraic equations (DAE)},
  author = {Karline Soetaert and Thomas Petzoldt and R. Woodrow Setzer},
  year = {2009},
  note = {R package version 1.5}
}

@MANUAL{limSolve,
  title = {limSolve: Solving linear inverse models},
  author = {Karline Soetaert and Van den Meersche, Karel and Dick van Oevelen},
  year = {2008},
  note = {R package version 1.2}
}

@ARTICLE{Verhulst38,
  author = {Verhulst, P. F.},
  title = {Notice sur la loi que la population pursuit dans son accroissement},
  journal = {Correspondance mathematique et physique},
  year = {1838},
  volume = {10},
  pages = {113-121}
}

@ARTICLE{Volterra26,
  author = {Volterra, V.},
  title = {{Variazioni e fluttuazioni del numero d'individui in specie animali
	conviventi}},
  journal = {Mem. R. Accad. Naz. dei Lincei. Ser. VI},
  year = {1926},
  volume = {2},
  pages = {31-113}
}

@ARTICLE{Volterra26a,
  author = {Volterra, V.},
  title = {Fluctuations in the abundance of a species considered mathematically},
  journal = {Nature},
  year = {1926},
  volume = {118},
  pages = {558-560}
}

@BOOK{zeebe03,
  title = {CO2 in Seawater: Equilibrium, kinetics, isotopes},
  publisher = {Elsevier},
  year = {2003},
  author = {Zeebe, R and Wolf-Gladrow, D}
}

