plot.mixstock.est {mixstock} | R Documentation

## plot mixed stock analysis estimates

### Description

plots a mixed stock analysis estimate as a point plot with 95% confidence limites

### Usage

    ## S3 method for class 'mixstock.est':
    plot(x, plot.freqs = FALSE,
       sourcectr=FALSE, contrib.lab = "Estimated source contributions",
       sourcefreq.lab = "Estimated source marker freqs",
       markcolors = rainbow(x$H),
       alength=0.25,
       aunits="inches",
       abbrev,...)

### Arguments

`x` | mixstock estimate
`plot.freqs` | plot marker frequency estimates?
`sourcectr` | plot source-centric estimates?
`contrib.lab` | label for source contribution plot
`sourcefreq.lab` | label for marker frequency plot
`markcolors` | colors corresponding to markers
`alength` | length of error bar ends in many-to-many plots
`aunits` | units of error bar end lengths in many-to-many plots
`abbrev` | abbreviate names on horizontal axis in many-to-many plots? Default if TRUE is 3 characters, but may also be an integer specifying the number of characters
`...` | other arguments to `barplot`

### Value

Produces a plot on the current graphics device.

### Note

The `...` argument can contain a great number of optional arguments to `barplot`: see `barplot` and `xyplot` (in the `lattice` package). Among many others, one can specify (for example) `scale=list(x=list(cex=0.6),y=list(log=TRUE))` for smaller labels on the horizontal axis and a log scale on the vertical axis; `layout=c(3,5)` to change the number of rows and columns of panels; or `as.table=TRUE` to change the ordering of the panel to top-to-bottom, left-to-right. (One can also use `abbreviate=TRUE` in the `scale` list, but the `abbrev` argument above seems to be more powerful.)

### Examples

      data(simex)
      u1 = uml(simex)
      plot(u1)
      plot(u1,plot.freqs=TRUE)

[Package mixstock version 0.9.2 Index]