@Article{Byrd+95,
author = "R. H. Byrd and P. Lu and J. Nocedal and C. Zhu",
year = 1995,
title = "A limited memory algorithm for bound constrained
                  optimization",
journal = "SIAM J. Scientific Computing",
volume=16,
pages = "1190-1208"
}

@Article{r-lang,
  Author         = "Ross Ihaka and Robert Gentleman",
  Title          = "R: A Language for Data Analysis and Graphics",
  Journal        = "Journal of Computational and Graphical Statistics",
  Volume         = "5",
  Number         = "3",
  Pages          = "299--314",
  year           = 1996,
  note = {Also see \url{http://www.r-project.org}.}
}

@Book{BurnAnde98,
  Author         = {Burnham, {Kenneth P.} and Anderson, {David R.}},
  Title          = {Model {S}election and {I}nference: {A} {P}ractical
                   {I}nformation-{T}heoretic {A}pproach},
  Publisher      = {Springer},
  Address        = {New York},
  year           = 1998
}


@Article{Elln+01,
  author = 	 {S. P. Ellner and E. McCauley and B. E. Kendall and
                  C. J. Briggs and P. R. Hosseini and S. N. Wood and
                  A. Janssen and M. W Sabelis and P. Turchin and
                  R. M. Nisbet and M. W. Murdoch},
  title = 	 {Habitat structure and population persistence in an experimental community},
  journal = 	 {Nature},
  year = 	 {2001},
  volume =	 {412},
  number =	 {6846},
  pages =	 {538-543},
  abstract = {Understanding spatial population dynamics is fundamental
                  for many questions in ecology and
                  conservation(1-4). Many theoretical mechanisms have
                  been proposed whereby spatial structure can promote
                  population persistence, in particular for
                  exploiter-victim systems (host-parasite/pathogen,
                  predator-prey) whose interactions are inherently
                  oscillatory and therefore prone to extinction of
                  local populations(5-11). Experiments have confirmed
                  that spatial structure can extend
                  persistence(11-16), but it has rarely been possible
                  to identify the specific mechanisms involved. Here
                  we use a model-based approach to identify the
                  effects of spatial population processes in
                  experimental systems of bean plants (Phaseolus
                  lunatus), herbivorous mites (Tetranychus urticae)
                  and predatory mites (Phytoseiulus  persimilis). On
                  isolated plants, and in a spatially undivided
                  experimental system of 90 plants, prey and predator
                  populations collapsed; however, introducing habitat
                  structure allowed long-term persistence. Using
                  mechanistic models, we determine that spatial
                  population structure did not contribute to
                  persistence, and spatially explicit models are not
                  needed. Rather, habitat structure reduced the
                  success of predators at locating prey outbreaks,
                  allowing between-plant asynchrony of local
                  population cycles due to random colonization events.}
}

@Book{Gelm+95,
  author =	 {Andrew Gelman and J. B. Carlin and H. S. Stern and
                  D. B. Rubin},
  title = 	 {Bayesian Data Analysis},
  publisher = 	 {Chapman and Hall},
  year = 	 {1995},
  address =	 {New York}
}

@Article{BeerFels01,
  author = 	 {P. Beerli and J. Felsenstein},
  title = 	 {Maximum likelihood estimation of a
       migration matrix and effective population sizes in $n$
subpopulations by using
       a coalescent approach},
  journal = 	 {PNAS},
  year = 	 {2001},
  volume =	 {98},
  number =	 {8},
  pages =	 {4563-4568}

}

@BOOK{Aitc86,
  author =       {J. Aitchison},
  title =        {The statistical analysis of compositional data},
  publisher =    {Chapman and Hall},
  year =         {1986},
  address =      {New York, New York, USA}
}

@ARTICLE{Alla94,
  author =       {M. Allard and M. M. Miyamoto and K. A. Bjorndal and A. B. Bolten and B. W. Bowen},
  title =        {Support for natal homing in green turtles from mitochondrial \uppercase{DNA}
                  sequences},
  journal =      {Copeia},
  year =         {1994},
  volume =       {1994},
  pages =        {34-41}
}

@ARTICLE{Alth84,
  author =       {P. M. E. Altham},
  title =        {Improving the precision of estimation by fitting a model},
  journal =      {Journal of Royal Statistical Society B},
  year =         {1984},
  volume =       {46},
  pages =        {118-119}
}


@BOOK{Avis94,
  author =       {J. C. Avise},
  title =        {Molecular markers, natural history, and evolution.},
  publisher =    {Chapman and Hall},
  year =         {1994},
  address =      {New York, New York, USA}
}

@ARTICLE{Bake+94,
  author =       {C. S. Baker and R. W. Slade and J. L. Bannister and R. B. Abernethy and
                  M. T. Weinrich and J. Lien and J. Urban and P. Corkeron and J. Calmabokidis
                  and O. Vasquez and S. R. Palumbi},
  title =        {Hierarchical structure of mitochondrial \uppercase{DNA} gene flow among
                  humpback whales, {{\em Megaptera movaeangliae}}, worldwide},
  journal =      {Molecular Ecology},
  year =         {1994},
  volume =       {3},
  pages =        {313-327}
}

@ARTICLE{Bala76,
  author =       {G. H. Balazs},
  title =        {Green turtle migration in the \uppercase{H}awaiian \uppercase{A}rchipelago},
  journal =      {Biological Conservation},
  year =         {1976},
  volume =       {9},
  pages =        {125-140}
}

@article{BassWitz00,
author= {Bass, A. L. and W. N. Witzell},
year={2000},
title={Demographic composition of immature green turtles {{\em
                  Chelonia mydas}} from the east central {Florida}
                  coast: evidence from {mtDNA} markers},
journal={Herpetologica},
volume=56,
pages={357-367}
}

@ARTICLE{Bass+96,
  author =       {A. L. Bass and D. A. Good and K. A. Bjorndal and J. I. Richardson and
                  Z-M Hills and J. A. Horrocks and B. W. Bowen},
  title =        {Testing models of female reproductive migratory behaviour and population
                  structure in the \uppercase{C}aribbean hawksbill turtle,
                  {{\em Eretmochelys imbricata}}, with {mtDNA}
                  sequences},
  journal =      {Molecular Ecology},
  year =         {1996},
  volume =       {5},
  pages =        {321-328}
}

@InCollection{BernGiro88,
  author =   {J. M. Bernardo and F. J. Gir\'{o}n},
  title =    {A \uppercase{B}ayesian analysis of simple mixture problems},
  booktitle =    {Bayesian statistics 3},
  publisher =    {Oxford University Press},
  year =     {1988},
  editor =   {J. M. Bernardo and M. H. De\uppercase{G}root and D. V. Lindley and A. F. M. Smith},
  address =      {Oxford, UK},
  pages =    {67-78}
}

@techreport{BGF98,
  author =       {D. P. Billheimer and P. Guttorp and W. F. Fagan},
  title =        {Statistical analysis and interpretation of discrete compositional data},
  journal =      {NRCSE Technical Report},
  year =         {1998},
  number =       {11},
  pages =        {29p + appendix},
  institution =  {University of Washington},
  address =      {Seattle, Washington, USA}
}

@ARTICLE{BjorBolt88,
  author =       {K. A. Bjorndal and A. B. Bolten},
  title =        {Growth rates of immature green turtles, {{\em Chelonia mydas}},
                  on feeding grounds in the southern \uppercase{B}ahamas},
  journal =      {Copeia},
  year =         {1988},
  volume =       {1988},
  pages =        {555-564}
}

@Article{BBM00,
  author =       {Bjorndal, K. A. and A. B. Bolten and H. R. Martins},
  title =        {Somatic growth model of juvenile loggerhead sea
                  turtles {{\em Caretta caretta}}: duration of pelagic
                  stage},
  journal =      {Marine Ecology Progress Series},
  year =         {2000},
  volume =       {202},
  pages =        {265-272}
}

@ARTICLE{Bjor+85,
  author =       {K. A. Bjorndal and A. Carr and A. B. Meylan and J. A. Mortimer},
  title =        {Reproductive biology of the hawksbill {{\em Eretmochelys
                  imbricata}} at {Tortuguero}, {Costa Rica},
                  with notes on the ecology of the species in the {Caribbean}},
  journal =      {Biological Conservation},
  year =         {1985},
  volume =       {34},
  pages =        {353-368}
}


@ARTICLE{Bjor+94,
  author =       {K. A. Bjorndal and A. B. Bolten and J. Gordon and J. A. Cami{\~n}as},
  title =        {{{\em Caretta caretta}} (loggerhead) growth and pelagic
                  movement},
  journal =      {Herpetological Review},
  year =         {1994},
  volume =       {25},
  pages =        {23-24}
}

@InCollection{BoltBala95,
  author =   {A. B. Bolten and G. H. Balazs},
  title =    {Biology of the early pelagic stage: the "lost year"},
  booktitle =    {Biology and conservation of sea turtles},
  publisher =    {Smithsonian Institution Press},
  year =     {1995},
  editor =   {K. A. Bjorndal},
  edition = {Revised},
  address =      {Washington D. C., USA},
  pages =    {575-581}
}

@ARTICLE{Bolt+92,
  author =       {A. B. Bolten and H. R. Martins and K. A. Bjorndal and M. Cocco and G. Gerosa},
  title =        {{{\em Caretta caretta}} (loggerhead) pelagic movement and growth},
  journal =      {Herpetological Review},
  year =         {1992},
  volume =       {23},
  pages =        {116}
}

@ARTICLE{Bolt+93,
  author =       {A. B. Bolten and H. R. Martins and K. A. Bjorndal and J. Gordon},
  title =        {Size-distribution of pelagic-stage loggerhead sea turtles
                  ({{\em Caretta caretta}}) in the water around the
                  {Azores} and {Madeira}},
  journal =      {Arquip\`{e}lago},
  year =         {1993},
  volume =       {11A},
  pages =        {49-54}
}

@ARTICLE{BSB92,
  author =       {A. B. Bolten and C. Santana and K. A. Bjorndal},
  title =        {Transatlantic crossing by a loggerhead turtle},
  journal =      {Marine Turtle Newsletter},
  year =         {1992},
  volume =       {59},
  pages =        {7-8}
}

@ARTICLE{Bolt+98,
  author =       {Alan B. Bolten and Karen A. Bjorndal and Helen R. Martins and Thomas Dellinger
                  and Manuel J. Biscotio and Sandra E. Encalada and Brian W. Bowen},
  title =        {Transatlantic developmental migrations of loggerhead sea turtles
                  demonstrated by mt\uppercase{DNA} sequence analysis},
  journal =      {Ecological Applications},
  year =         {1998},
  volume =       {8},
  number =       {1},
  pages =        {1-7}
}

@InCollection{Bowe95,
  author =   {B. W. Bowen},
  title =    {Molecular genetic studies of marine turtles},
  booktitle =    {Biology and conservation of sea turtles},
  publisher =    {Smithsonian Institution Press},
  year =     {1995},
  editor =   {K. A. Bjorndal},
  edition = {Revised},
  address =      {Washington D. C., USA},
  pages =    {585-587}
}

@ARTICLE{Bowe95BS,
  author =       {B. W. Bowen},
  title =        {Tracking marine turtles with genetic markers: voyages of the ancient mariners},
  journal =      {BioScience},
  year =         {1995},
  volume =       {45},
  pages =        {528-534}
}

@InCollection{BoweKarl97,
  author =       {Bowen, B. W. and S. A. Karl},
  title =        {Population genetics, phylogeography, and molecular evolution},
  booktitle =    {The biology of sea turtles},
  pages =        {29-50},
  publisher =    {CRC Press},
  year =         {1997},
  editor =       {P. L. Lutz and J. A. Musick},
  address =      {Boca Raton, Florida, USA},
}

@ARTICLE{Bowe+92,
  author =       {B. W. Bowen and A. B. Meylan and J. P. Ross and C. J. Limpus and G. H. Balazs
                  and J. C. Avise},
  title =        {Global population structure and natural history of the green turtle
                  ({{\em Chelonia mydas}}) in terms of matriarchal phylogeny},
  journal =      {Evolution},
  year =         {1992},
  volume =       {46},
  pages =        {865-881}
}


@ARTICLE{Bowe+95,
  author =       {B. W. Bowen and F. A. Abreu-Grobois and G. H. Barazs and
                  N. Kamezaki and C. J. Limpus and R. J. Ferl},
  title =        {{Trans-Pacific} migrations of the loggerhead turtle
                  ({{\em Caretta caretta}}) demonstrated with mitochondrial
                  \uppercase{DNA} markers},
  journal =      {Proceedings of the National Academy of Sciences (USA)},
  year =         {1995},
  volume =       {92},
  pages =        {3731-3734}
}

@ARTICLE{Bowe+93,
  author =       {B. W. Bowen and J. C. Avise and J. I. Richardson and A. B. Maylan and
                  D. Margaritoulis and S. R. Hopkins-Murphy},
  title =        {Population structure of loggerhead turtle ({{\em Caretta caretta}})
                  in the northwestern {Atlantic Ocean} and
                  {Mediterranean Sea}},
  journal =      {Conservation Biology},
  year =         {1993},
  volume =       {7},
  pages =        {834-844}
}

@ARTICLE{Bowe+96,
  author =       {B. W. Bowen and A. L. Bass and A. Graica-Rodriquez and
                  C. E. Diez and R. van Dam and A. B. Bolten and K. A. Bjorndal and
                  M. M. Miyamoto and R. J. Ferl},
  title =        {Origin of hawksbill turtles in a {Caribbean} feeding area
                  as indicated by genetic markers},
  journal =      {Ecological Applications},
  year =         {1996},
  volume =       {6},
  pages =        {566-572}
}

@ARTICLE{Brod+94,
  author =       {D. Broderick and C. Moritz and J. D. Miller and M. Guinea and R. J. Prince
                  and C. J. Limpus},
  title =        {Genetic studies of the hawksbill turtle ({{\em Eretmochelys
                  imbricata}}): evidence for multiple stocks in {Australian} waters},
  journal =      {Pacific Conservation Biology},
  year =         {1994},
  volume =       {1},
  pages =        {123-131}
}

@BOOK{CarlLoui96,
  author =       {B. P. Carlin and T. A. Louis},
  title =        {Bayes and empirical {B}ayes methods for data analysis},
  publisher =    {Chapman and Hall},
  year =         {1996},
  address =      {New York, New York, USA}
}


@ARTICLE{Carr75,
  author =       {A. Carr},
  title =        {The {Ascension Island} green turtle colony},
  journal =      {Copeia},
  year =         {1975},
  volume =       {1975},
  pages =        {547-555}
}

@ARTICLE{Carr80,
  author =       {A. Carr},
  title =        {Some problems of sea turtle ecology},
  journal =      {American Zoologist},
  year =         {1980},
  volume =       {20},
  pages =        {489-498}
}


@InCollection{Carr82,
  author =   {A. Carr},
  title =    {Notes on the behavioral ecology of sea turtles},
  booktitle =    {Biology and conservation of sea turtles},
  publisher =    {Smithsonian Institution Press},
  year =     {1995},
  editor =   {K. A. Bjorndal},
  address =      {Washington D. C., USA},
  pages =    {19-26}
}

@ARTICLE{Carr86,
  author =       {A. Carr},
  title =        {Rips, \uppercase{FADS}, and littler loggerheads},
  journal =      {BioScience},
  year =         {1986},
  volume =       {36},
  pages =        {92-100}
}

@ARTICLE{Carr87,
  author =       {A. Carr},
  title =        {Impact of nondegradable marine debris on the ecology and survival outlook
                  of sea turtles},
  journal =      {Marine Population Bulletin},
  year =         {1987},
  volume =       {18},
  pages =        {352-356}
}

@ARTICLE{CCM78,
  author =       {A. Carr and M. H. Carr and A. B. Meylan},
  title =        {The ecology and migrations of sea turtles. 7. The {West
                  Caribbean} green turtle colony},
  journal =      {Bulletin of American Museum of Natural History},
  year =         {1978},
  volume =       {162},
  pages =        {1-46}
}

@InCollection{Chap96,
  author =   {R. W. Chapman},
  title =    {A mixed stock analysis of the green sea turtle: the need for null hypothesis},
  booktitle =    {Proceedings of the International Symposium on Sea Turtle Conservation Genetics},
  publisher =    {NOAA Tech Mem NMFS-SEFSC-396},
  year =     {1996},
  editor =   {B. W. Bowen and W. N. Witzell},
  address =      {Miami, Florida, USA},
  pages =    {137-146}
}

@ARTICLE{Cher54,
  author =       {H. Chernoff},
  title =        {On the Distribution of the Likelihood Ratio},
  journal =      {Annals of Mathematical Statistics},
  year =         {1954},
  volume =       {25},
  pages =        {573-578}
}


@ARTICLE{ColnHoff87,
  author =       {W. Colney and B. Hoffman},
  title =        {Nesting activity of sea turtles in {Florida}},
  journal =      {Florida Scientist},
  year =         {1987},
  volume =       {50},
  pages =        {201-210}
}

@ARTICLE{CTM96,
  author =       {F. H. J. Crome and M. R. Thomas and L. A. Moore},
  title =        {A Novel {B}ayesian Approach to Assessing Impacts of Rain Forest Logging},
  journal =      {Ecological Applications},
  year =         {1996},
  volume =       {6},
  number =       {4},
  pages =        {1104-1123}
}

@ARTICLE{CCC87,
  author =       {D. T. Crouse and L. B. Crowder and H. Caswell},
  title =        {A stage-based population model for loggerhead sea turtles and
                  implication for conservation},
  journal =      {Ecology},
  year =         {1987},
  volume =       {68},
  pages =        {1412-1423}
}

@ARTICLE{Crow+94,
  author =       {L. B. Crowder and D. T. Crouse and S. S. Heppell and T. H. Martin},
  title =        {Predicting the impact of turtle excluder devices on loggerhead sea
                  turtle populations},
  journal =      {Ecological Applications},
  year =         {1994},
  volume =       {4},
  pages =        {437-445}
}

@ARTICLE{Denn96,
  author =       {Brian Dennis},
  title =        {Discussion: Should Ecologists Become {B}ayesians?},
  journal =      {Ecological Applications},
  year =         {1996},
  volume =       {6},
  number =       {4},
  pages =        {1095-1103}
}

@ARTICLE{Diam76,
  author =       {A. Diamond},
  title =        {Breeding biology and conservation of hawksbill turtles,
                  {{\em Eretmochelys imbricata}} L., on {Cousin
                  Island}, {Seycheeles}},
  journal =      {Biological Conservation},
  year =         {1976},
  volume =       {8},
  pages =        {199-215}
}

@InCollection{DiebHsip96,
  author =       {J. Diebolt and E. {H S Ip}},
  editor =       {W. R. Gilks and S. Richardson and D. J. Spiegelhalter},
  title  =       {Stochastic EM: method and application},
  booktitle =        {{Markov Chain Monte Carlo} in practice},
  publisher =    {Chapman and Hall},
  year =         {1996},
  address =      {London, UK},
  pages   =      {259-273}
}

@ARTICLE{DiebRobe94,
  author =       {J. Diebolt and C. P. Robert},
  title =        {Estimation of finite stock-mixture distribution through {B}ayesian sampling},
  journal =      {Journal of Royal Statistical Society B},
  year =         {1994},
  volume =       {56},
  pages =        {363-375}
}

@ARTICLE{DixoElli96,
  author =       {P. Dixon and A. M. Ellison},
  title =        {Introduction: Ecological Applications of {B}ayesian Inference},
  journal =      {Ecological Applications},
  year =         {1996},
  volume =       {6},
  number =       {4},
  pages =        {1034-1035}
}

@ARTICLE{Edwa96,
  author =       {Don Edwards},
  title =        {Comment: The First Data Analysis Should be Journalistic},
  journal =      {Ecological Applications},
  year =         {1996},
  volume =       {6},
  number =       {4},
  pages =        {1090-1094}
}


@BOOK{EfroTibs93,
  author =       {B. Efron and R. J. Tibshirani},
  title =        {An introduction to the bootstrap},
  publisher =    {Chapman and Hall},
  year =         {1993},
  address =      {New York, New York, USA}
}

@InCollection{Ehrh82,
  author =   {L. M. Ehrhart},
  title =    {A review off sea turtle reproduction},
  booktitle =    {Biology and conservation of sea turtles},
  publisher =    {Smithsonian Institution Press},
  year =     {1995},
  editor =   {K. A. Bjorndal},
  address =      {Washington D. C., USA},
  pages =    {29-38}
}

@ARTICLE{Elli96,
  author =       {A. M. Ellison},
  title =        {An Introduction to {B}ayesian Inference for Ecological Research and Environmental Decision-Making},
  journal =      {Ecological Applications},
  year =         {1996},
  volume =       {6},
  number =       {4},
  pages =        {1036-1046}
}


@ARTICLE{Enca+96,
  author =       {S. Encalada and P. N. Lahanas and M. M. Miyamoto and K. A. Bjorndal and
                  A. B. Bolten and B. W. Bowen},
  title =        {Phylogeography and population structure of {Atlantic} and
                  {Mediterranean} green turtle {{\em Chelonia mydas}}: a
                  mitochondrial \uppercase{DNA} control region sequence assessment},
  journal =      {Molecular Ecology},
  year =         {1996},
  volume =       {5},
  pages =        {473-482}
}

@ARTICLE{Enca+ip,
  author =       {S. E. Encalada and K. A. Bjorndal and A. B. Bolten and J. C. Zurita and
                  B. Schroeder and E. Possaardt and C. Sears and B. W. Bowen},
  title =        {Population structure of loggerhead turtle ({{\em Caretta caretta}})
                  nesting colonies in the {Atlantic} and {Mediterranean}
                  regions as inferred from mitochondrial \uppercase{DNA} control region
                  sequences},
  journal =      {Marine Biology},
  year =         {In Press},
  volume =       {},
}

@ARTICLE{Epif+95,
  author =       {J. M. Epifanio and P. E. Smouse and C. J. Kobak and B. L. Brown},
  title =        {Mitochondrial {DNA} divergence among populations of {American} shad
                  ({{\em Alosa sapidissima}}): how much variation is enough for mixed-stock
                  analysis?},
  journal =      {Canadian Journal of Fisheries and Aquatic Sciences},
  year =         {1995},
  volume =       {52},
  pages =        {1688-1702}
}

@ARTICLE{Four+84,
  author =       {D. A. Fournier and T. D. Beacham and B. E. Riddell and C. A. Busack},
  title =        {Estimating stock composition in mixed stock fisheries using morphometric,
                  meristic, and electrophoretic characteristics},
  journal =      {Canadian Journal of Fisheries and Aquatic Sciences},
  year =         {1984},
  volume =       {41},
  pages =        {400-408}
}

@ARTICLE{GaskGeor72,
  author =       {T. J. Gaskell and B. J. George},
  title =        {A Bayesian Modification of the Lincoln Index},
  journal =      {Journal of Applied Ecology},
  year =         {1972},
  volume =       {9},
  number =       {2},
  pages =        {377-384}
}

@InCollection{Geye96,
  author =       {C. J. Geyer},
  editor =       {W. R. Gilks and S. Richardson and D. J. Spiegelhalter},
  title  =       {Estimation and optimization of functions},
  booktitle =        {{Markov Chain Monte Carlo} in practice},
  publisher =    {Chapman and Hall},
  year =         {1996},
  address =      {London, UK},
  pages   =      {241-258}
}


@InCollection{Gelm96,
  author =       {A. Gelman},
  editor =       {W. R. Gilks and S. Richardson and D. J. Spiegelhalter},
  title  =       {Inference and monitoring convergence},
  booktitle =        {{Markov Chain Monte Carlo} in practice},
  publisher =    {Chapman and Hall},
  year =         {1996},
  address =      {London, UK},
  pages   =      {131-143}
}

@ARTICLE{GelmRubi92,
  title  =       {Inference from iterative simulation using multiple sequences},
  author =       {A. Gelman and D. B. Rubin},
  journal =      {Statistical Science},
  year =         {1992},
  volume =       {7},
  pages =        {457-511}
}


@ARTICLE{Gibs97,
  author =       {G. J. Gibson},
  title =        {{Markov Chain Monte Carlo} methods for fitting
                  spatiotemporal stochastic models in plant epidemiology},
  journal =      {Journal of the Royal Statistical Society Series C},
  year =         {1997},
  volume =       {46},
  number =       {2},
  pages =        {215-233}
}


@ARTICLE{GibsRens98,
  author =       {G. J. Gibson and E. Renshaw},
  title =        {Estimating parameters in stochastic compartmental
                  models using {Markov} chain methods},
  journal =      {IMA Journal of Mathematics Applied in Medicine and Biology},
  year =         {1998},
  volume =       {15},
  number =       {1},
  pages =        {19-40}
}


@BOOK{GRS96,
  editor =       {W. R. Gilks and S. Richardson and D. J. Spiegelhalter},
  title =        {{Markov Chain Monte Carlo} in practice},
  publisher =    {Chapman and Hall},
  year =         {1996},
  address =      {London, UK}
}

@InCollection{GRS96b,
  author =       {W. R. Gilks and S. Richardson and D. J. Spiegelhalter},
  editor =       {W. R. Gilks and S. Richardson and D. J. Spiegelhalter},
  title  =       {Introducing {Markov Chain Monte Carlo}},
  booktitle =        {{Markov Chain Monte Carlo} in practice},
  publisher =    {Chapman and Hall},
  year =         {1996},
  address =      {London, UK},
  pages   =      {1-19}
}

@InCollection{Gilk96,
  author =       {W. R. Gilks},
  editor =       {W. R. Gilks and S. Richardson and D. J. Spiegelhalter},
  title  =       {Full conditional distributions},
  booktitle =        {{Markov Chain Monte Carlo} in practice},
  publisher =    {Chapman and Hall},
  year =         {1996},
  address =      {London, UK},
  pages   =      {75-88}
}

@InCollection{GilkRobe96,
  author =       {W. R. Gilks and G. O. Roberts},
  editor =       {W. R. Gilks and S. Richardson and D. J. Spiegelhalter},
  title  =       {Strategies for improving {MCMC}},
  booktitle =        {{Markov Chain Monte Carlo} in practice},
  publisher =    {Chapman and Hall},
  year =         {1996},
  address =      {London, UK},
  pages   =      {89-114}
}

@ARTICLE{Gott+99,
  author =       {T. R. Gottwald and G. J. Gibson and S. M. Garnsey and M. Irey},
  title =        {Examination of the effect of aphid vector population
                  composition on the spatial dynamics of citrus
                  tristeza virus spread by stochastic modeling},
  journal =      {Phytopathology},
  year =         {1999},
  volume =       {89},
  number =       {7},
  pages =        {603-608}
}

@ARTICLE{HRL00,
  author =       {J. P. Huelsenbeck and B. Rannala and B. Larget},
  title =        {A {B}ayesian framework for the analysis of cospeciation},
  journal =      {Evolution},
  year =         {2000},
  volume =       {54},
  number =       {2},
  pages =        {352-364}
}

@BOOK{MclaPeel01,
  author =       {G. McLachlan and D. Peel},
  title =        {Finite Mixture Models},
  publisher =    {John Wiley and Sons, INC.},
  year =         {2001},
  address =      {New York, New York, USA}
}

@ARTICLE{Harp79,
  author =       {Charles W. {Harper, Jr.}},
  title =        {A Bayesian Probability View of Phylogenetic Systematics},
  journal =      {Systematic Zoology},
  year =         {1979},
  volume =       {28},
  number =       {4},
  pages =        {547-553}
}

@BOOK{HilbMang97,
  author =       {R. Hilborn and M. Mangel},
  title =        {The ecological detective : confronting models with data},
  publisher =    {Princeton University Press},
  year =         {1997},
  address =      {Princeton, New Jersey, USA}
}


@BOOK{HMM96,
  author =       {D. Hills and C. Moritz and B. K. Mable},
  title =        {Molecular Systematics},
  publisher =    {Sinauer Associates},
  year =         {1996},
  address =      {Sunderland, Massachusetts, USA},
  edition =      {Second}
}

@ARTICLE{Hugh74,
  author =       {G. R. Hughes},
  title =        {The sea turtles of south-east \uppercase{A}frica. \uppercase{II}. The biology of the
                  \uppercase{T}ongaland loggerhead turtle {{\em Caretta caretta}}
                  \uppercase{L}. with comments on leatherback turtle {{\em Dermochelys coriacea}}
                  \uppercase{L}. and the green turtle {{\em Chelonia mydas}} \uppercase{L}. in the study
                  region},
  journal =      {Invest Rep oceanogr Res Inst, Durban},
  year =         {1974},
  volume =       {36},
  pages =        {1-96}
}

@ARTICLE{Ingr79,
  author =       {M. C. Ingrahm},
  title =        {Marine environmental conditions off the \uppercase{A}tlantic and
                 {Gulf coasts} of {United States},
                 {January 1977-March} 1978},
  journal =      {Marine Fisheries Review},
  year =         {1979},
  volume =       {5\/6},
  pages =        {35-47}
}


@ARTICLE{Laha+94,
  author =       {P. N. Lahanas and M. M. Miyamoto and K. A. Bjorndal and A. B. Bolten},
  title =        {Molecular evolution and population genetics of \uppercase{G}reater
                  \uppercase{C}aribbean green turtles ({{\em Chelonia mydas}})
                  as inferred from mitochondrial \uppercase{DNA} control region sequences},
  journal =      {Genetics},
  year =         {1994},
  volume =       {94},
  pages =        {57-67}
}


@ARTICLE{Laha+98,
  author =       {P. N. Lahanas and K. A. Bjorndal and A. B. Bolten and S. E. Encalada
                  and M. M. Miyamoto and R. A. Valverde and B. W. Bowen},
  title =        {Genetic composition of a green turtle ({{\em Chelonia mydas}})
                  feeding ground population: evidence for multiple origins},
  journal =      {Marine Biology},
  year =         {1998},
  volume =       {130},
  pages =        {345-352}
}

@BOOK{Lang97,
  author =       {K Lange},
  title =        {Mathematical and statistical methods for genetic analysis},
  publisher =    {Springer},
  year =         {1997},
  address =      {New York, New York}
}

@ARTICLE{Leon77,
  author =       {T. Leonard},
  title =        {Bayesian simultaneous estimation for several multinomial distributions},
  journal =      {Communications in Statistics: Theory and Method},
  year =         {1977},
  volume =       {A6},
  pages =        {619-630}
}


@ARTICLE{Limp+83,
  author =       {C. J. Limpus and J. D. Miller and V. Baker and E. Mc\uppercase{L}achlan},
  title =        {The hawksbill turtle, {{\em Eretmochelys imbricata}}
                  (\uppercase{L}.), in north-eastern {Australia}: the
                  {Campbell Island} rookery},
  journal =      {Australian Wildlife Research},
  year =         {1983},
  volume =       {10},
  pages =        {185-197}
}

@ARTICLE{Limp92,
  author =       {C. J. Limpus and J. D. Miller and C. J. Parmenter and D. Reimer and
                  N. Mc\uppercase{L}achlan and R. Webb},
  title =        {Migration of green ({{\em Chelonia mydas}}) and loggerhead
                 ({{\em Caretta caretta}}) turtles to and from eastern
                  \uppercase{A}ustralian rookeries},
  journal =      {Wildlife Research},
  year =         {1992},
  volume =       {19},
  pages =        {347-358}
}

@BOOK{Lunn00,
  author =       {C. E. Lunneborg},
  booktitle =        {Data analysis by resampling concept and applications},
  publisher =      {Duxbury Press},
  year =         {2000},
  address =       {Pacific Grove, California, USA}
}

@ARTICLE{Ludw96,
  author =       {Donald Ludwig},
  title =        {Uncertainty and the Assessment of Extinction Probabilities},
  journal =      {Ecological Applications},
  year =         {1996},
  volume =       {6},
  number =       {4},
  pages =        {1067-1076}
}


@ARTICLE{MPD97,
  author =       {S. McKinnell and J. J. Pella and M. L. Dahlberg},
  title =        {Population-specific aggregations of steelhead trout ({{\em Oncorhynchus
                  mykiss}}) in the {North Pacific Ocean}},
  journal =      {Canadian Journal of Fisheries and Aquatic Sciences},
  year =         {1997},
  volume =       {54},
  pages =        {2358-2376}
}



@ARTICLE{MSM95,
  author =       {A. B. Meylan and B. Schroeder and A. Mosier},
  title =        {Sea turtle nesting activity in the {State} of {Florida}},
  journal =      {Florida Marine Research Publications},
  year =         {1995},
  volume =       {52},
  pages =        {1-51}
}

@ARTICLE{Mich83,
  author =       {J. H. {Michael, Jr.}},
  title =        {Contribution of cutthroat trout in headwater streams to the sea-run population},
  journal =      {California Fish and Game},
  year =         {1983},
  volume =       {69},
  pages =        {68-76}
}

@ARTICLE{Mill87,
  author =       {R. B. Miller},
  title =        {Maximum likelihood estimation of mixed stock fishery composition},
  journal =      {Canadian Journal of Fisheries and Aquatic Sciences},
  year =         {1987},
  volume =       {44},
  pages =        {583-590}
}


@ARTICLE{MitcMerr89,
  author =       {L. G. Mitchell and C. R. Merrill},
  title =        {Affinity generation of single-stranded \uppercase{DNA} for dideoxy
                  sequencing following the polymerase chain reaction},
  journal =      {Analytical Biochemistry},
  year =         {1989},
  volume =       {178},
  pages =        {239-242}
}

@InCollection{Moll96,
  author =       {A. Molli{\'e}},
  editor =       {W. R. Gilks and S. Richardson and D. J. Spiegelhalter},
  title  =       {Bayesian mapping of disease},
  booktitle =        {{Markov Chain Monte Carlo} in practice},
  publisher =    {Chapman and Hall},
  year =         {1996},
  address =      {London, UK},
  pages   =      {359-379}
}


@ARTICLE{MullFalo87,
  author =       {K. B. Mullis and F. Faloona},
  title =        {Specific synthesis of \uppercase{DNA} in vitro via polymerase-catalyzed chain reaction},
  journal =      {Methods in Enzymology},
  year =         {1987},
  volume =       {155},
  pages =        {335-350}
}

@ARTICLE{NML94,
  author =       {J. A. Norman and C. Moritz and C. J. Limpus},
  title =        {Mitochondrial \uppercase{DNA} control region polymorphisms:
                  genetic markers for ecological studies of marine turtles},
  journal =      {Molecular Ecology},
  year =         {1994},
  volume =       {3},
  pages =        {363-373}
}


@techreport{NMFS91,
  author =       {National Marine Fisheries Service (\uppercase{NMFS}) and \uppercase{U.S.}
                  Fish and \uppercase{W}ildlife \uppercase{S}ervice},
  title =        {Recovery plan for \uppercase{U.S.} population of loggerhead turtle},
  institution =  {National Marine Fisheries Service},
  year =         {1991},
  address =      {Washington D. C.}
}

@techreport{NRC90,
  author =       {{National Research Council}},
  title  =       {Decline of sea turtles: causes and prevention},
  institution=   {National Academy of Sciences},
  address =      {Washington D. C., USA}
}

@ARTICLE{NML94,
  author =       {J. A. Norman and C. Moritz and C. J. Limpus},
  title =        {Mitochondrial \uppercase{DNA} control region polymorphisms: genetic
                  markers for ecological study of marine turtles},
  journal =      {Molecular Ecology},
  year =         {1994},
  volume =       {3},
  pages =        {363-373}
}

@ARTICLE{OconWrig97,
  author =       {M. O'Connell and G. B. Milner},
  title =        {Microsatellite {DNA} in fishes},
  journal =      {Reviews in Fish Biology and Fisheries},
  year =         {1997},
  volume =       {7},
  pages =        {331-363}
}


@ARTICLE{Parm83,
  author =       {C. J. Parmenter},
  title =        {Reproductive migration in the hawksbill turtle ({{\em Eretmochelys imbricata}})},
  journal =      {Copeia},
  year =         {1983},
  volume =       {1983},
  pages =        {271-273}
}


@ARTICLE{PascKare96,
  author =       {Miguel A. Pascual and Peter Kareiva},
  title =        {Predicting the Outcome of Competition Using Experimental Data:
                  Maximum Likelihood and Bayesian Approaches},
  journal =      {Ecology},
  year =         {1996},
  volume =       {77},
  number =       {2},
  pages =        {337-349}
}



@ARTICLE{PellMasu01,
  author =       {J. Pella and M. Masuda},
  title =        {Bayesian methods for analysis of stock mixtures from genetic characters},
  journal =      {Fisheries Bulletin},
  year =         {2001},
  volume =       {99},
  pages =        {151-167}
}


@InCollection{PellMiln87,
  author =   {J. J. Pella and G. B. Milner},
  title =    {Use of genetic markers in stock composition analysis},
  booktitle =    {Population genetics and fisheries management},
  publisher =    {University of Washington Press},
  year =     {1987},
  editor =   {N. Ryman and F. W. Utter},
  address =      {Seattle, Washington, USA},
  pages =    {247-276}
}

@InCollection{RaftLewi96,
  author =   {A. E. Raftery and S. M. Lewis},
  title =    {Implementing {MCMC}},
  booktitle =    {Markov Chain Monte Carlo in practice},
  publisher =    {Chapman and Hall},
  year =     {1996},
  editor =   {W. R. Gilks  and S. Richardson and D. J. Spiegelhalter},
  address =      {London, UK},
  pages =    {115-130}
}

@ARTICLE{Reck90,
  author =       {Kenneth H. Reckhow},
  title =        {Bayesian Inference in Non-Replicated Ecological Studies},
  journal =      {Ecology},
  year =         {1990},
  volume =       {71},
  number =       {6},
  pages =        {2053-2059}
}

@ARTICLE{RensGibs98,
  author =       {E. Renshaw and G. J. Gibson},
  title =        {Can {Markov Chain Monte Carlo} be usefully applied to
                  stochastic processes with hidden birth times?},
  journal =      {Inverse Problems},
  year =         {1998},
  volume =       {14},
  number =       {6},
  pages =        {1581-1606}
}


@ARTICLE{Rice89,
  author =       {W. R. Rice},
  title =        {Analyzing tables of statistics tests},
  journal =      {Evolution},
  year =         {1989},
  volume =       {43},
  pages =        {223-225}
}

@BOOK{RobeCase99,
  author =       {Christian P. Robert and George Casella},
  title =        {Manote Carlo Statistical Methods},
  publisher =    {Springer},
  year =         {1999},
  address =      {New York, New York, USA}
}


@ARTICLE{Rose+99,
  author =       {P. E. Rosel and S. C. France and J. Y. Wang and T. D. Kocher},
  title =        {Genetic structure of harbor porpoise {{\em Phocoena phocoena}}
                  populations in the {North Atlantic} based on mitochondrial and
                  nuclear markers},
  journal =      {Molecular Ecology},
  year =         {1999},
  volume =       {8},
  pages =        {S41-S54}
}

@ARTICLE{Rose+01,
  author =       {O. Rosen and W. X. Jiang and G. King and M. A. Tanner},
  title =        {Bayesian and frequentist inference for ecological inference: the {R X C} case},
  journal =      {STATISTICA NEERLANDICA},
  year =         {2001},
  volume =       {55},
  number =       {2},
  pages =        {134-156}
}


@ARTICLE{SNC77,
  author =       {F. Sanger and S. Nickeln and A. R. Coulson},
  title =        {\uppercase{DNA} sequencing with chain-terminating inhobitors},
  journal =      {Proceedings of the National Academy of Sciences (USA)},
  year =         {1977},
  volume =       {75},
  pages =        {5463-5467}
}

@ARTICLE{Sear+95,
  author =       {C. J. Sears and B. W. Bowen and R. W. Chapman and S. B. Galloway and
                  S. R. Hopkins-Murphy and C. M. Woodley},
  title =        {Demographic composition of the feeding population of juvenile loggerhead
                  sea turtles ({{\em Caretta caretta}}) off {Charleston},
                  {South Carolina}: evidence from mitochondrial
                  \uppercase{DNA} markers},
  journal =      {Marine Biology},
  year =         {1995},
  volume =       {123},
  pages =        {869-874}
}

@ARTICLE{SWT90,
  author =       {P. E. Smouse and R. S. Waples and J. A. Tworek},
  title =        {A genetic mixture analysis for use with
incomplete source population data},
  journal =      {Canadian Journal of Fisheries and Aquatic Sciences},
  year =         {1990},
  volume =       {47},
  pages =        {620-634}
}

@ARTICLE{Solo94,
  author =       {Andrew R. Solow},
  title =        {On the Bayesian Estimation of the Number of Species in a Community},
  journal =      {Ecology},
  year =         {1994},
  volume =       {75},
  number =       {7},
  pages =        {2139-2142}
}


@ARTICLE{SCC95,
  author =       {C. A. Stow and S. R. Carpenter and K. L. Cottingham},
  title =        {Resource vs. Ratio-Dependent Consumer-Resource Models: A Bayesian Perspective},
  journal =      {Ecology},
  year =         {1995},
  volume =       {76},
  number =       {6},
  pages =        {1986-1990}
}

@InCollection{SHF75,
  author =   {M. Sutherland and P. W. Holland and S. E. Fienberg},
  title =    {Combining Bayes and frequency approaches to estimate a multinomial parameter},
  booktitle =    {Studies in Bayesian econometrics and statistics in honor of Leonard J. Savage},
  editor =    {S. Fienberg and A. Zellner},
  year =     {1975},
  publisher =   {North-Holland Publishing Company},
  address =      {New York, New York, USA},
  pages =    {585-617}
}

@ARTICLE{TannWong87,
  author =       {M. A. Tanner and W. Wong},
  title =        {The calculation of posterior distributions by data augmentation (with discussion)},
  journal =      {Journal of American Statistical Association},
  year =         {1987},
  volume =       {82},
  pages =        {528-550}
}

B. L. Taylor, P. R. Wade, R. A. Stehn, J. F. Cochrane
Ecological Applications, Vol. 6, No. 4. (Nov., 1996), pp. 1077-1089.


@ARTICLE{Tayl+96,
  author =       {B. L. Taylor and P. R. Wade and R. A. Stehn and J. F. Cochrane},
  title =        {A Bayesian Approach to Classification Criteria for Spectacled Eiders},
  journal =      {Ecological Applications},
  year =         {1996},
  volume =       {6},
  number =       {4},
  pages =        {1077-1089}
}


@ARTICLE{UtteRyma93,
  author =       {F. Utter and N Ryman},
  title =        {Genetic markers and mixed stock fisheries},
  journal =      {Fisheries},
  year =         {1993},
  volume =       {18},
  pages =        {11-21}
}

Parametric Empirical Bayes Methods for Ecological Applications
Jay M. Ver Hoef
Ecological Applications, Vol. 6, No. 4. (Nov., 1996), pp. 1047-1055.

@ARTICLE{Verh96,
  author =       {J. M. {Ver Hoef}},
  title =        {Parametric Empirical Bayes Methods for Ecological Applications},
  journal =      {Ecological Applications},
  year =         {1996},
  volume =       {6},
  number =       {4},
  pages =        {1947-1055}
}

@ARTICLE{Wade00,
  author =       {P. R. Wade},
  title =        {Bayesian methods in conservation biology},
  journal =      {Conservation Biology},
  year =         {2000},
  volume =       {14},
  number =       {5},
  pages =        {1308-1316}
}

@ARTICLE{WaplTeel90,
  author =       {R. S. Waples and D. J. Teel},
  title =        {Conservation genetics of {Pacific} salmon. I. {Temporal} changes in allele
                  frequency},
  journal =      {Conservation Biology},
  year =         {1990},
  volume =       {4},
  pages =        {144-156}
}

@InCollection{WhitDens92,
  author =   {P. S. White and {L. D. Densmore} \uppercase{III}},
  title =    {Mitochondrial \uppercase{DNA} isolation},
  booktitle =    {Molecular genetic analysis of populations: a practical approach},
  publisher =    {IRL Press at Oxford University Press},
  year =     {1992},
  editor =   {A. R. Hoelzel},
  address =      {New York, New York, USA},
  pages =    {29-58}
}

@ARTICLE{WKS96,
  author =       {Lara J. Wolfson and Joseph B. Kadane and Mitchell J. Small},
  title =        {Bayesian Environmental Policy Decisions: Two Case Studies},
  journal =      {Ecological Applications},
  year =         {1996},
  volume =       {6},
  number =       {4},
  pages =        {1056-1066}
}

@ARTICLE{WyneSalm92,
  author =       {J. Wyneken and M Salmon},
  title =        {Frenzy and post frenzy swimming activity in loggerhead, green and
                  leatherback hatchling sea turtles},
  journal =      {Copeia},
  year =         {1992},
  volume =       {1992},
  pages =        {478-484}
}


@ARTICLE{XKS94,
  author =       {S. Xu and C. J. Kobak and P. E. Smouse},
  title =        {Constrained least squares estimation of mixed population stock composition from
                  mt\uppercase{DNA} haplotype frequency data},
  journal =      {Canadian Journal of Fisheries and Aquatic Sciences},
  year =         {1994},
  volume =       {51},
  pages =        {417-425}
}

@ARTICLE{ZaykPudo93,
  author =       {D. V. Zaykin and A. I. Pudovkin},
  title =        {Two programs to estimate chi-square values using pseudoprobability test},
  journal =      {Journal of Heredity},
  year =         {1993},
  volume =       {84},
  pages =        {152}
}


@TechReport{BUGS95,
  author = 	 {Spiegelhalter, D. J. and A. Thomas and N. Best and
                  W. R. Gilks},
  title = 	 {{BUGS: Bayesian Inference Using Gibbs Sampling}, Version 0.50},
  institution =  {Medical Research Council Biostatistics Unit,
                  Institute of Public Health, Cambridge University},
  year = 	 {1995},
  address =	 {Cambridge, England},
  url = {www.mrc-bsu.cam.ac.uk/bugs/}
}

@article{CowlCarl95,
author="M. K. Cowles and B. P. Carlin",
year = 1995,
title ="{Markov Chain Monte Carlo} diagnostics: A comparative review",
journal = "J. Amer. Stat. Soc.",
volume=91,
pages="883-904"
}

@article{BrooRobe98,
author="Brooks, S. P.  and Roberts, G. O.",
year = 1998,
title = "Assessing convergence of {Markov Chain Monte Carlo}
                  algorithms",
journal = "Statistics and Computing", volume= 8, pages = "319-335"
}

@article{Wals00,
author="P. D. Walsh",
journal="Conservation Biology",
volume=14,
pages="1533-1537",
year=2000,
title="Sample size for the diagnosis of conservation units"
}

@Article{OkuyamaBolker2005,
  author = 	 {Okuyama, Toshinori and Bolker, Benjamin M.},
  title = 	 {Combining genetic and ecological data to estimate
                  sea turtle origins},
  journal = 	 {Ecological Applications},
  year = 	 {2005},
  volume =	 {15},
  number =	 {1},
  pages =	 {315-325}
}

@article{bolk+03c,
title = {Stock estimation for sea turtle populations using
genetic markers: accounting for sampling error of rare
genotypes},
author={Benjamin Bolker and Toshinori Okuyama and Karen
Bjorndal and Alan Bolten},
journal={Ecological Applications},
year={2003},
volume=13,
number=3,
pages={763-775}
}

@BOOK{Gelm+96,
  author =       {A. Gelman and J. Carlin and H. S. Stern and D. B. Rubin},
  title =        {Bayesian data analysis},
  publisher =    {Chapman and Hall},
  year =         {1996},
  address =      {New York, New York, USA}
}

@Manual{Rmanual,
    title = {R: A language and environment for statistical computing},
    author = {{R Development Core Team}},
    organization = {R Foundation for Statistical Computing},
    address = {Vienna, Austria},
    year = {2005},
    note = {{ISBN} 3-900051-07-0},
    url = {http://www.R-project.org},
  }

@Article{Bolker+07,
  author = 	 {Benjamin M. Bolker and Toshinori Okuyama and Karen
                  A. Bjorndal and Alan B. Bolten},
  title = 	 {Incorporating multiple mixed stocks in mixed stock
                  analysis: 'many-to-many' analyses},
  journal = 	 {Molecular Ecology},
  year = 	 {2007},
  note = {in press}
}

