Package: PAGI
Version: 1.0
Title: The package can identify the dysregulated KEGG pathways based on
        global influence from the internal effect of pathways and
        crosstalk between pathways.
Author: Junwei Han,Yanjun Xu,Haixiu Yang,Chunquan Li and Xia Li
Maintainer: Junwei Han <hanjunwei1981@163.com>
Description: The package can identify the dysregulated KEGG pathways
        based on global influence from the internal effect of pathways
        and crosstalk between pathways. (1) The PAGI package can
        prioritize the pathways associated with two biological states
        by statistical significance or FDR. (2) The PAGI package can
        evaluated the global influence factor (GIF) score in the global
        gene-gene network constructed based on the relationships of
        genes extracted from each pathway in KEGG database and the
        overlapped genes between pathways.
Depends: R (>= 2.15.1),igraph
Collate: PAGI.1.0.R getExample.R
LazyData: Yes
License: GPL (>= 2)
biocViews: Statistics, crosstalk, Pathways, Graphs, Networks
Packaged: 2012-12-12 07:07:49 UTC; lironghong
Repository: CRAN
Date/Publication: 2012-12-12 09:11:57
Built: R 3.0.3; ; 2015-04-16 23:18:26 UTC; windows
