# Entropy Partitioning to Measure Diversity

## Documentation for package ‘entropart’ version 1.2.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

entropart-package | Entropy Partitioning to Measure Diversity
AllenH | Phylogenetic Entropy of a Community
AlphaDiversity | Unbiased alpha diversity of a metacommunity
AlphaEntropy | Unbiased alpha entropy of a metacommunity
as.SimTest | SimTest class
bcDiversity | Generalized diversity of a community
bcDqz | Similarity-based diversity of a community
bcHqz | Similarity-based entropy of a community
bcHqzBeta | Similarity-based beta entropy of a community
bcPhyloBetaEntropy | Phylogenetic Beta Entropy of a community
bcPhyloDiversity | Phylogenetic Diversity of a Community
bcPhyloEntropy | Phylogenetic Entropy of a community
bcRao | Rao Quadratic Entropy of a Community
bcShannon | Shannon entropy of a community
bcShannonBeta | Shannon beta entropy of a community
bcSimpson | Simpson entropy of a community
bcSimpsonBeta | Simpson beta entropy of a community
bcTsallis | Tsallis Entropy of a community
bcTsallisBeta | Tsallis beta entropy of a community
BetaDiversity | Unbiased beta diversity of a metacommunity
BetaEntropy | Unbiased beta entropy of a metacommunity
ChaoPD | Phylogenetic Diversity of a Community
CommunityProfile | Diversity or Entropy Profile of a community
Coverage | Sample coverage of a community
Diversity | Generalized diversity of a community
DivEst | Diversity Estimation of a metacommunity
DivPart | Diversity Partition of a metacommunity
DivProfile | Diversity Profile of a metacommunity
Dqz | Similarity-based diversity of a community
EightSpAbundance | Abundances of 8 species to run examples.
EightSpTree | Functional tree with 8 species.
Enq | Grassberger's expectation of n^q
entropart | Entropy Partitioning to Measure Diversity
EntropyCI | Entropy of Monte-Carlo simulated communities
expq | Exponential of order q
GammaDiversity | Unbiased gamma diversity of a metacommunity
GammaEntropy | Unbiased gamma entropy of a metacommunity
Hqz | Similarity-based entropy of a community
HqzBeta | Similarity-based beta entropy of a community
is.MCdiversity | Meta-Community diversity class.
is.MCentropy | Meta-Community entropy class.
is.MetaCommunity | Metacommunity class
is.PhyloDiversity | Phylogenetic Diversity of a Community
is.PhyloEntropy | Phylogenetic Entropy of a community
is.PhyloValue | Phylogenetic entropy of diversity.
is.PPtree | Preprocessed Trees.
is.SimTest | SimTest class
KLq | Generalized Kullback-Leibler divergence
lnq | Logarithm of order q
MCdiversity | Meta-Community diversity class.
MCentropy | Meta-Community entropy class.
MergeC | Manipulation of meta-communities
MergeMC | Manipulation of meta-communities
MetaCommunity | Metacommunity class
Originality.Species | Originality of species
Paracou618.dist | Functional distances between pairs of species of Paracou field station plots 6 and 18, two 1-ha plots inventoried by the Bridge project.
Paracou618.Functional | Functional tree of species of Paracou field station plots 6 and 18, two 1-ha plots inventoried by the Bridge project.
Paracou618.MC | Paracou field station plots 6 and 18, two 1-ha plots inventoried by the Bridge project.
Paracou618.Taxonomy | Taxonomy (Family - Genus - Species) of Paracou field station plots 6 and 18, two 1-ha plots inventoried by the Bridge project.
PDFD | Phylogenetic Diversity / Functional Diversity of a Community
PhyloApply | Apply a Function over a Phylogenetic Tree
PhyloBetaEntropy | Phylogenetic Beta Entropy of a community
PhyloDiversity | Phylogenetic Diversity of a Community
PhyloEntropy | Phylogenetic Entropy of a community
PhyloValue | Phylogenetic entropy of diversity.
plot.DivEst | Diversity Estimation of a metacommunity
plot.DivPart | Diversity Partition of a metacommunity
plot.DivProfile | Diversity Profile of a metacommunity
plot.MCdiversity | Meta-Community diversity class.
plot.MCentropy | Meta-Community entropy class.
plot.MetaCommunity | Metacommunity class
plot.PhyloValue | Phylogenetic entropy of diversity.
plot.PPtree | Preprocessed Trees.
plot.SimTest | SimTest class
PPtree | Preprocessed Trees.
Rao | Rao Quadratic Entropy of a Community
Richness | Simpson entropy of a community
Shannon | Shannon entropy of a community
ShannonBeta | Shannon beta entropy of a community
ShuffleMC | Manipulation of meta-communities
Simpson | Simpson entropy of a community
SimpsonBeta | Simpson beta entropy of a community
SimTest | SimTest class
summary.DivEst | Diversity Estimation of a metacommunity
summary.DivPart | Diversity Partition of a metacommunity
summary.DivProfile | Diversity Profile of a metacommunity
summary.MCdiversity | Meta-Community diversity class.
summary.MCentropy | Meta-Community entropy class.
summary.MetaCommunity | Metacommunity class
summary.PhyloDiversity | Phylogenetic Diversity of a Community
summary.PhyloEntropy | Phylogenetic Entropy of a community
summary.PhyloValue | Phylogenetic entropy of diversity.
summary.SimTest | SimTest class
Tsallis | Tsallis Entropy of a community
TsallisBeta | Tsallis beta entropy of a community