DiversityCurves         Diversity Curves
SamplingConv            Converting Sampling Estimates
binTimeData             Bin Simulated Temporal Ranges in Discrete
                        Intervals
branchClasses           Partitions the branch lengths of a tree into
                        several classes based on their placement.
cal3TimePaleoPhy        Three Rate Calibrated Timescaling of
                        Paleo-Phylogenies
cladogeneticTraitCont   Simulate Cladogenetic Trait Evolution
compareTimescaling      Comparing the Time-Scaling of Trees
constrainParPaleo       Constrain Parameters for a Model Function from
                        paleotree
dateNodes               Absolute Dates for Nodes of a Time-Scaled
                        Phylogeny
degradeTree             Randomly Collapse a Portion of Nodes on a
                        Phylogeny
depthRainbow            Paint Tree Branch Depth by Color
durationFreq            Models of Sampling and Extinction for Taxonomic
                        Duration Datasets
expandTaxonTree         Extrapolating Lower-Level Taxon Phylogenies
                        from Higher-Level Taxon Trees
footeValues             Calculates Values for Foote's Inverse
                        Survivorship Analyses
freqRat                 Frequency Ratio Method for Estimating Sampling
                        Probability
getSampProbDisc         Fit Models of Sampling Probability to
                        Discrete-Interval Taxon Ranges
getSampRateCont         Fit Models of Sampling Rates to Continuous-Time
                        Taxon Ranges
graptDisparity          Morphlogical Character and Range Data for late
                        Ordovician and Early Silurian Graptoloidea
horizonSampRate         Estimate Sampling Rate from Sampling Horizon
                        Data (Solow and Smith, 1997)
inverseSurv             Inverse Survivorship Models in the Fossil
                        Record
minBranchLength         Scales Edge Lengths of a Phylogeny to a Minimum
                        Branch Length
modelMethods            Model Function Methods: Parameter Names, Bounds
                        and Initial Values
modifyTerminalBranches
                        Modify or Drop Terminal Branches of Various
                        Types
multiDiv                Calculating Diversity Curves Across Multiple
                        Datasets
nearestNeighborDist     Nearest Neighbor Distances for Morphological
                        Disparity Studies
optimPaleo              Simplified Optimizer for paleotree Likelihood
                        Functions
paleotree-package       paleotree: Paleontological and Phylogenetic
                        Analyses of Evolution
perCapitaRates          perCapitaRates
perfectParsCharTree     Simulate a Set of Parsimony-Informative
                        Characters for a Phylogeny
plotTraitgram           Plot a Traitgram for Continuous Traits
pqr2Ps                  Joint Probability of A Clade Surviving
                        Infinitely or Being Sampled Once
probAnc                 Probability of being a sampled ancestor of
                        another sampled taxon
retiolitinae            Cladogram and Range Data for the Retiolitinae
reverseList             Reverse List Structure
rootSplit               Split Tip Taxa by Root Divergence
sampleRanges            Sampling Taxon Ranges
seqTimeList             Construct a Stochastic Sequenced Time-List from
                        an Unsequenced Time-List
simFossilTaxa           Simulating Taxa in the Fossil Record
simFossilTaxa_SRCond    Simulating Taxa in the Fossil Record,
                        Conditioned on Sampling Rate
simPaleoTrees           Simulating Un-Conditioned Trees of Fossil Taxa
taxa2cladogram          Convert Simulated Taxon Data into a Cladogram
taxa2phylo              Convert Simulated Taxon Data into a Phylogeny
termTaxa                Simulating Extinct Clades of Monophyletic Taxa
timeLadderTree          Resolve Polytomies by Order of First Appearance
timePaleoPhy            Timescaling of Paleo-Phylogenies
timeSliceTree           Time-Slicing a Phylogeny
unitLengthTree          Scale Tree to Unit-Length
