GWAF-package            Genome-wide association/interaction analysis
                        and rare variant analysis with family data
GWplot                  function for making genome-wide p-value plot
auto                    function to generate scripts for genome-wide
                        association/interaction analysis
geepack.lgst            function for testing association between a
                        dichotomous trait and a genotyped SNP in family
                        data using Generalized Estimation Equation
                        model
geepack.lgst.batch      function to test genetic associations between a
                        dichotomous trait and a batch of genotyped SNPs
                        in families using Generalized Estimation
                        Equation model
geepack.lgst.batch.imputed
                        function to test genetic associations between a
                        dichotomous trait and a batch of imputed SNPs
                        in families using Generalized Estimation
                        Equation model
geepack.lgst.imputed    function for testing association between a
                        dichotomous trait and an imputed SNP in family
                        data using Generalized Estimation Equation
                        model
geepack.lgst.int        function for testing gene-environment or
                        gene-gene interaction between a dichotomous
                        trait and a genotyped SNP in family data using
                        Generalized Estimation Equation model
geepack.lgst.int.batch
                        function to test gene-environment or gene-gene
                        interactions between a dichotomous trait and a
                        batch of genotyped SNPs in families using
                        Generalized Estimation Equation model
geepack.lgst.int.batch.imputed
                        function to test gene-environment or gene-gene
                        interactions between a dichotomous trait and a
                        batch of imputed SNPs in families using
                        Generalized Estimation Equation model
geepack.lgst.int.imputed
                        function for testing gene-environment or
                        gene-gene interaction between a dichotomous
                        trait and an imputed SNP in family data using
                        Generalized Estimation Equation model
geepack.quant.batch     function to test genetic associations between a
                        continuous trait and a batch of genotyped SNPs
                        in families using Generalized Estimation
                        Equation model
geepack.quant.batch.imputed
                        function to test associations between a
                        continuous trait and a batch of imputed SNPs in
                        families using Generalized Estimation Equation
                        model
geepack.quant.int.batch
                        function to test gene-environment or gene-gene
                        interactions for a continuous trait and a batch
                        of genotyped SNPs in families using Generalized
                        Estimation Equation model
geepack.quant.int.batch.imputed
                        function to test gene-environment or gene-gene
                        interactions between a continuous trait and a
                        batch of imputed SNPs in families using
                        Generalized Estimation Equation model
glmm.lgst               function for testing association between a
                        dichotomous trait and a genotyped SNP in family
                        data using Generalized Linear Mixed Effects
                        model
glmm.lgst.batch         function to test genetic association between a
                        dichotomous trait and a batch of genotyped SNPs
                        in families using Generalized Linear Mixed
                        Effects model
lmeVpack.batch.imputed
                        function to efficiently test associations
                        between a continuous trait and a batch of
                        imputed SNPs in families using Linear Mixed
                        Effects model
lmepack.batch           function to test genetic associations between a
                        continuous trait and a batch of genotyped SNPs
                        in families using Linear Mixed Effects model
lmepack.batch.imputed   function to test associations between a
                        continuous trait and a batch of imputed SNPs in
                        families using Linear Mixed Effects model
lmepack.int.batch       function to test gene-environment or gene-gene
                        interactions for a continuous trait and a batch
                        of genotyped SNPs in families using Linear
                        Mixed Effects model
lmepack.int.batch.imputed
                        function to test gene-environment or gene-gen
                        interaction and associations between a
                        continuous trait and a batch of imputed SNPs in
                        families using Linear Mixed Effects model
qq                      function to make Qantile-Qantile (QQ) plot for
                        p-values
