# Comprehensive Luminescence Dating Data Analysis

## Documentation for package ‘Luminescence’ version 0.4.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

A B C E F G L M P R S V W

Luminescence-package | Comprehensive Luminescence Dating Data Analysis

## -- A --

analyse_IRSAR.RF | Analyse IRSAR RF measurements
analyse_pIRIRSequence | Analyse post-IR IRSL sequences
analyse_SAR.CWOSL | Analyse SAR CW-OSL measurements
Analyse_SAR.OSLdata | Analyse SAR CW-OSL measurements.
analyse_SAR.TL | Analyse SAR TL measurements
apply_CosmicRayRemoval | Function to remove cosmic rays from an RLum.Data.Spectrum S4 class object
apply_EfficiencyCorrection | Function to apply spectral efficiency correction to RLum.Data.Spectrum S4 class objects

## -- B --

BaseDataSet.CosmicDoseRate | Base data set for cosmic dose rate calculation

## -- C --

calc_AliquotSize | Estimate the amount of grains on an aliquot
calc_CentralDose | Apply the central age model (CAM) after Galbraith et al. (1999) to a given De distribution
calc_CommonDose | Apply the (un-)logged common age model after Galbraith et al. (1999) to a given De distribution
calc_CosmicDoseRate | Calculate the cosmic dose rate
calc_FadingCorr | Apply a fading correction according to Huntley & Lamothe (2001) for a given g-value.
calc_FiniteMixture | Apply the finite mixture model (FMM) after Galbraith (2005) to a given De distribution
calc_FuchsLang2001 | Apply the model after Fuchs & Lang (2001) to a given De distribution.
calc_HomogeneityTest | Apply a simple homogeneity test after Galbraith (2003)
calc_IEU | Apply the internal-external-uncertainty (IEU) model after Thomsen et al. (2007) to a given De distribution
calc_MaxDose | Apply the maximum age model to a given De distribution
calc_MinDose | Apply the (un-)logged minimum age model (MAM) after Galbraith et al. (1999) to a given De distribution
calc_OSLLxTxRatio | Calculate Lx/Tx ratio for CW-OSL curves
calc_SourceDoseRate | Calculation of the source dose rate via the date of measurement
calc_Statistics | Function to calculate statistic measures
calc_TLLxTxRatio | Calculate the Lx/Tx ratio for a given set of TL curves [beta version]
coerce-method | Class '"RLum.Data.Curve"'
coerce-method | Class '"RLum.Data.Image"'
coerce-method | Class '"RLum.Data.Spectrum"'
CW2pHMi | Transform a CW-OSL curve into a pHM-OSL curve via interpolation under hyperbolic modulation conditions
CW2pLM | Transform a CW-OSL curve into a pLM-OSL curve
CW2pLMi | Transform a CW-OSL curve into a pLM-OSL curve via interpolation under linear modulation conditions
CW2pPMi | Transform a CW-OSL curve into a pPM-OSL curve via interpolation under parabolic modulation conditions

## -- E --

ExampleData.BINfileData | Example data from a SAR OSL and SAR TL measurement for the package Luminescence
ExampleData.CW_OSL_Curve | Example CW-OSL curve data for the package Luminescence
ExampleData.DeValues | Example De data sets for the package Luminescence
ExampleData.FittingLM | Example data for fit_LMCurve() in the package Luminescence
ExampleData.LxTxData | Example Lx/Tx data from CW-OSL SAR measurement
ExampleData.LxTxOSLData | Example Lx and Tx curve data from an artificial OSL measurement
ExampleData.RLum.Analysis | Example data as 'RLum.Analysis' objects
ExampleData.RLum.Data.Image | Example data as 'RLum.Data.Image' objects
ExampleData.XSYG | Example data for a SAR OSL measurement and a TL spectrum using a lexsyg reader
extract_IrradiationTimes | Extract irradiation times from an XSYG file

## -- F --

fit_CWCurve | Nonlinear Least Squares Fit for CW-OSL curves [beta version]
fit_LMCurve | Nonlinear Least Squares Fit for LM-OSL curves

## -- G --

get_Layout | Collection of layout definitions
get_Risoe.BINfileData | Class '"Risoe.BINfileData"'
get_Risoe.BINfileData-method | Class '"Risoe.BINfileData"'
get_Risoe.BINfileData-methods | Class '"Risoe.BINfileData"'
get_RLum | General accessor function for RLum S4 class objects
get_RLum.Analysis | Class '"RLum.Analysis"'
get_RLum.Analysis-method | Class '"RLum.Analysis"'
get_RLum.Analysis-methods | Class '"RLum.Analysis"'
get_RLum.Data.Curve | Class '"RLum.Data.Curve"'
get_RLum.Data.Curve-method | Class '"RLum.Data.Curve"'
get_RLum.Data.Curve-methods | Class '"RLum.Data.Curve"'
get_RLum.Data.Image | Class '"RLum.Data.Image"'
get_RLum.Data.Image-method | Class '"RLum.Data.Image"'
get_RLum.Data.Image-methods | Class '"RLum.Data.Image"'
get_RLum.Data.Spectrum | Class '"RLum.Data.Spectrum"'
get_RLum.Data.Spectrum-method | Class '"RLum.Data.Spectrum"'
get_RLum.Data.Spectrum-methods | Class '"RLum.Data.Spectrum"'
get_RLum.Results | Class '"RLum.Results"'
get_RLum.Results-method | Class '"RLum.Results"'
get_structure.RLum.Analysis | Class '"RLum.Analysis"'
get_structure.RLum.Analysis-method | Class '"RLum.Analysis"'

## -- L --

length_RLum.Analysis | Class '"RLum.Analysis"'
length_RLum.Analysis-method | Class '"RLum.Analysis"'
length_RLum.Analysis-methods | Class '"RLum.Analysis"'
Luminescence | Comprehensive Luminescence Dating Data Analysis

## -- M --

merge_Risoe.BINfileData | Merge Risoe.BINfileData objects or Risoe BIN-files
merge_RLum | General merge function for RLum S4 class objects
merge_RLum.Analysis | Merge function for RLum.Analysis S4 class objects
merge_RLum.Data.Curve | Merge function for RLum.Data.Curve S4 class objects
merge_RLum.Results | Class '"RLum.Results"'
merge_RLum.Results-method | Class '"RLum.Results"'
merge_RLum.Results-methods | Class '"RLum.Results"'

## -- P --

plot_AbanicoPlot | Function to create an Abanico Plot.
plot_DRTResults | Visualise dose recovery test results
plot_GrowthCurve | Fit and plot a growth curve for luminescence data (Lx/Tx against dose)
plot_Histogram | Plot a histogram with separate error plot
plot_KDE | Plot kernel density estimate with statistics
plot_RadialPlot | Function to create a Radial Plot
plot_Risoe.BINfileData | Plot single luminescence curves from a BIN file object
plot_RLum | General plot function for RLum S4 class objects
plot_RLum.Analysis | Plot function for an RLum.Analysis S4 class object
plot_RLum.Data.Curve | Plot function for an RLum.Data.Curve S4 class object
plot_RLum.Data.Image | Plot function for an 'RLum.Data.Image' S4 class object
plot_RLum.Data.Spectrum | Plot function for an RLum.Data.Spectrum S4 class object
plot_RLum.Results | Plot function for an RLum.Results S4 class object

## -- R --

readBIN2R | Import Risoe BIN-file into R
readSPE2R | Import Princeton Intruments (TM) SPE-file into R
readXSYG2R | Import XSYG files to R
Risoe.BINfileData-class | Class '"Risoe.BINfileData"'
Risoe.BINfileData2RLum.Analysis | Convert Risoe.BINfileData object to an RLum.Analysis object
Risoe.BINfileData2RLum.Data.Curve | Convert an element from a Risoe.BINfileData object to an RLum.Data.Curve object
RLum-class | Class '"RLum"'
RLum.Analysis-class | Class '"RLum.Analysis"'
RLum.Data-class | Class '"RLum.Data"'
RLum.Data.Curve-class | Class '"RLum.Data.Curve"'
RLum.Data.Image-class | Class '"RLum.Data.Image"'
RLum.Data.Spectrum-class | Class '"RLum.Data.Spectrum"'
RLum.Results-class | Class '"RLum.Results"'

## -- S --

Second2Gray | Converting values from seconds (s) to gray (Gy)
set_Risoe.BINfileData | Class '"Risoe.BINfileData"'
set_Risoe.BINfileData-method | Class '"Risoe.BINfileData"'
set_RLum.Analysis | Class '"RLum.Analysis"'
set_RLum.Analysis-method | Class '"RLum.Analysis"'
set_RLum.Data.Curve | Class '"RLum.Data.Curve"'
set_RLum.Data.Curve-method | Class '"RLum.Data.Curve"'
set_RLum.Data.Curve-methods | Class '"RLum.Data.Curve"'
set_RLum.Data.Image | Class '"RLum.Data.Image"'
set_RLum.Data.Image-method | Class '"RLum.Data.Image"'
set_RLum.Data.Image-methods | Class '"RLum.Data.Image"'
set_RLum.Data.Spectrum | Class '"RLum.Data.Spectrum"'
set_RLum.Data.Spectrum-method | Class '"RLum.Data.Spectrum"'
set_RLum.Data.Spectrum-methods | Class '"RLum.Data.Spectrum"'
set_RLum.Results | Class '"RLum.Results"'
set_RLum.Results-method | Class '"RLum.Results"'
show-method | Class '"RLum.Analysis"'
show-method | Class '"RLum.Data.Curve"'
show-method | Class '"RLum.Data.Image"'
show-method | Class '"RLum.Data.Spectrum"'
show-method | Class '"RLum.Results"'
show-method | Class '"Risoe.BINfileData"'
sTeve | sTeve - sophisticated tool for efficient data validation and evaluation

## -- V --

validObject-method | Class '"RLum.Results"'

## -- W --

writeR2BIN | Export Risoe.BINfileData into Risoe BIN-file