seedy-package	seedy-package
ancestors	ancestors
deepseq	deepseq
deepseqmat	deepseqmat
diversity.range	diversity.range
estcoaltime	estcoaltime
expsnps	expsnps
flat	flat
gd	gd
hump	hump
librtoDNA	librtoDNA
meansnps	meansnps
networkmat	networkmat
outbreak	outbreak
plotdistmat	plotdistmat
plotdiversity	plotdiversity
plotnetwork	plotnetwork
plotobservedsnps	plotobservedsnps
plotoutbreak	plotoutbreak
plotsnpfreq	plotsnpfreq
seedy	seedy-package
sharedvariants	sharedvariants
simfixoutbreak	simfixoutbreak
simulateoutbreak	simulateoutbreak
simulatepopulation	simulatepopulation
transmission	transmission
transroutes	transroutes
withinhost	withinhost
