Statistical Exploration of Landscapes of Phylogenetic Trees


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Documentation for package ‘treescape’ version 1.8.16

Help Pages

DengueTrees BEAST analysis of Dengue fever
findGroves Identify clusters of similar trees
fluTrees BEAST analysis of seasonal influenza (A/H3N2)
linearMrca Linear MRCA function
medTree Geometric median tree function
multiDist Metric function for 'multiPhylo' input
plotGroves Scatterplot of groups of trees
plotGrovesD3 Scatterplot of groups of trees using 'scatterD3'
refTreeDist Metric function for comparing a reference 'phylo' to 'multiPhylo' input
treeDist Metric function
treescape Phylogenetic tree exploration
treescapeServer Web-based tree explorer
treeVec Tree vector function
woodmiceTrees Bootstrap trees from woodmouse dataset