RPANDA-package	RPANDA-package
Anolis.data	Anolis.data
Balaenopteridae	Balaenopteridae
BGB.examples	BGB.examples
BICompare	BICompare
Calomys	Calomys
Cetacea	Cetacea
CreateGeoObject	CreateGeoObject
CreateGeoObject_BioGeoBEARS	CreateGeoObject_BioGeoBEARS
createModel	createModel
createModelCoevolution	createModelCoevolution
fitTipData	fitTipData
fitTipData,PhenotypicModel-method	fitTipData-methods
fitTipData-methods	fitTipData-methods
fit_bd	fit_bd
fit_coal_cst	fit_coal_cst
fit_coal_var	fit_coal_var
fit_env	fit_env
fit_sgd	fit_sgd
fit_t_comp	fit_t_comp
fit_t_env	fit_t_env
getDataLikelihood	getDataLikelihood
getDataLikelihood,PhenotypicModel-method	getDataLikelihood-methods
getDataLikelihood-methods	getDataLikelihood-methods
getTipDistribution	getTipDistribution
getTipDistribution,PhenotypicACDC-method	getTipDistribution-methods
getTipDistribution,PhenotypicADiag-method	getTipDistribution-methods
getTipDistribution,PhenotypicBM-method	getTipDistribution-methods
getTipDistribution,PhenotypicDD-method	getTipDistribution-methods
getTipDistribution,PhenotypicGMM-method	getTipDistribution-methods
getTipDistribution,PhenotypicModel-method	getTipDistribution-methods
getTipDistribution,PhenotypicOU-method	getTipDistribution-methods
getTipDistribution,PhenotypicPM-method	getTipDistribution-methods
getTipDistribution-methods	getTipDistribution-methods
InfTemp	InfTemp
JSDtree	JSDtree
JSDtree_cluster	JSDtree_cluster
likelihood_bd	likelihood_bd
likelihood_coal_cst	likelihood_coal_cst
likelihood_coal_var	likelihood_coal_var
likelihood_sgd	likelihood_sgd
likelihood_t_DD	likelihood_t_DD
likelihood_t_DD_geog	likelihood_t_DD_geog
likelihood_t_env	likelihood_t_env
likelihood_t_MC	likelihood_t_MC
likelihood_t_MC_geog	likelihood_t_MC_geog
lines.fit_t.env	lines.fit_t.env
modelSelection	modelSelection
modelSelection,PhenotypicModel-method	modelSelection-methods
modelSelection-methods	modelSelection-methods
PhenotypicACDC-class	PhenotypicACDC-class
PhenotypicADiag-class	PhenotypicADiag-class
PhenotypicBM-class	PhenotypicBM-class
PhenotypicDD-class	PhenotypicDD-class
PhenotypicGMM-class	PhenotypicGMM-class
PhenotypicModel-class	PhenotypicModel-class
PhenotypicOU-class	PhenotypicOU-class
PhenotypicPM-class	PhenotypicPM-class
Phocoenidae	Phocoenidae
Phyllostomidae	Phyllostomidae
Phyllostomidae_genera	Phyllostomidae_genera
plot.fit_t.env	plot.fit_t.env
plot_BICompare	plot_BICompare
plot_dtt	plot_dtt
plot_fit_bd	plot_fit_bd
plot_fit_env	plot_fit_env
plot_spectR	plot_spectR
print,PhenotypicModel-method	PhenotypicModel-class
RPANDA	RPANDA-package
show,PhenotypicModel-method	PhenotypicModel-class
sim.convergence.geo	sim.convergence.geo
sim.divergence.geo	sim.divergence.geo
simulateTipData	simulateTipData
simulateTipData,PhenotypicModel-method	simulateTipData-methods
simulateTipData-methods	simulateTipData-methods
sim_sgd	sim_sgd
sim_t_comp	sim_t_comp
sim_t_env	sim_t_env
spectR	spectR
[,PhenotypicModel,ANY,ANY,ANY-method	PhenotypicModel-class
[<-,PhenotypicModel,ANY,ANY,ANY-method	PhenotypicModel-class
