* using log directory 'd:/Rcompile/CRANpkg/local/3.2/BeSS.Rcheck' * using R version 3.2.5 (2016-04-14) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'BeSS/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'BeSS' version '1.0.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'BeSS' can be installed ... ERROR Installation failed. See 'd:/Rcompile/CRANpkg/local/3.2/BeSS.Rcheck/00install.out' for details. * DONE The installation logfile: * installing *source* package 'BeSS' ... ** package 'BeSS' successfully unpacked and MD5 sums checked ** libs *** arch - i386 make[1]: Entering directory `/cygdrive/d/temp/RtmpkLUA2B/R.INSTALL1ae8397e2f46/BeSS/src-i386' g++ -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.2/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.2/RcppEigen/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o g++ -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.2/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.2/RcppEigen/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c bess.cpp -o bess.o bess.cpp: In function 'Rcpp::List abess_lm(Eigen::MatrixXd, Eigen::VectorXd, int, int, int, int, Eigen::VectorXd, double)': bess.cpp:347:21: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'Eigen::DenseCoeffsBase, 1>::Scalar {aka double}' is ambiguous bess.cpp:347:21: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:348:21: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'Eigen::DenseCoeffsBase, 1>::Scalar {aka double}' is ambiguous bess.cpp:348:21: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:349:20: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'Eigen::DenseCoeffsBase, 1>::Scalar {aka double}' is ambiguous bess.cpp:349:20: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:350:20: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'Eigen::DenseCoeffsBase, 1>::Scalar {aka double}' is ambiguous bess.cpp:350:20: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:363:17: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'double' is ambiguous bess.cpp:363:17: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:364:17: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'double' is ambiguous bess.cpp:364:17: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:365:17: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'double' is ambiguous bess.cpp:365:17: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:366:25: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'Eigen::DenseCoeffsBase, 1>::Scalar {aka double}' is ambiguous bess.cpp:366:25: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:367:24: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'Eigen::DenseCoeffsBase, 1>::Scalar {aka double}' is ambiguous bess.cpp:367:24: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:386:19: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'double' is ambiguous bess.cpp:386:19: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:387:19: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'double' is ambiguous bess.cpp:387:19: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] make[1]: *** [bess.o] Error 1 make[1]: Leaving directory `/cygdrive/d/temp/RtmpkLUA2B/R.INSTALL1ae8397e2f46/BeSS/src-i386' Warning: running command 'make -f "Makevars.win" -f "D:/RCompile/recent/R-3.2.5/etc/i386/Makeconf" -f "D:/RCompile/recent/R-3.2.5/etc/i386/Makevars.site" -f "D:/RCompile/recent/R-3.2.5/share/make/winshlib.mk" SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' SHLIB="BeSS.dll" OBJECTS="RcppExports.o bess.o registerDynamicSymbol.o"' had status 2 make[1]: Entering directory `/cygdrive/d/temp/RtmpkLUA2B/R.INSTALL1ae8397e2f46/BeSS/src-i386' g++ -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"d:/RCompile/CRANpkg/lib/3.2/Rcpp/include" -I"d:/RCompile/CRANpkg/lib/3.2/RcppEigen/include" -I"d:/RCompile/r-compiling/local/local323/include" -O2 -Wall -mtune=core2 -c bess.cpp -o bess.o bess.cpp: In function 'Rcpp::List abess_lm(Eigen::MatrixXd, Eigen::VectorXd, int, int, int, int, Eigen::VectorXd, double)': bess.cpp:347:21: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'Eigen::DenseCoeffsBase, 1>::Scalar {aka double}' is ambiguous bess.cpp:347:21: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:348:21: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'Eigen::DenseCoeffsBase, 1>::Scalar {aka double}' is ambiguous bess.cpp:348:21: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:349:20: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'Eigen::DenseCoeffsBase, 1>::Scalar {aka double}' is ambiguous bess.cpp:349:20: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:350:20: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'Eigen::DenseCoeffsBase, 1>::Scalar {aka double}' is ambiguous bess.cpp:350:20: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:363:17: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'double' is ambiguous bess.cpp:363:17: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:364:17: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'double' is ambiguous bess.cpp:364:17: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:365:17: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'double' is ambiguous bess.cpp:365:17: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:366:25: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'Eigen::DenseCoeffsBase, 1>::Scalar {aka double}' is ambiguous bess.cpp:366:25: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:367:24: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'Eigen::DenseCoeffsBase, 1>::Scalar {aka double}' is ambiguous bess.cpp:367:24: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:386:19: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'double' is ambiguous bess.cpp:386:19: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] bess.cpp:387:19: error: conversion from 'Rcpp::Vector<19>::Proxy {aka Rcpp::internal::generic_proxy<19>}' to 'double' is ambiguous bess.cpp:387:19: note: candidates are: d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:64:4: note: Rcpp::internal::generic_proxy::operator int() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:63:4: note: Rcpp::internal::generic_proxy::operator bool() const [with int RTYPE = 19] d:/RCompile/CRANpkg/lib/3.2/Rcpp/include/Rcpp/vector/generic_proxy.h:58:26: note: Rcpp::internal::generic_proxy::operator U() const [with U = double, int RTYPE = 19] make[1]: *** [bess.o] Error 1 make[1]: Leaving directory `/cygdrive/d/temp/RtmpkLUA2B/R.INSTALL1ae8397e2f46/BeSS/src-i386' Warning: running command 'make -f "Makevars.win" -f "D:/RCompile/recent/R-3.2.5/etc/i386/Makeconf" -f "D:/RCompile/recent/R-3.2.5/etc/i386/Makevars.site" -f "D:/RCompile/recent/R-3.2.5/share/make/winshlib.mk" SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' SHLIB="BeSS.dll" OBJECTS="RcppExports.o bess.o registerDynamicSymbol.o" symbols.rds' had status 2 ERROR: compilation failed for package 'BeSS' * removing 'd:/Rcompile/CRANpkg/lib/3.2/BeSS'