* using log directory 'd:/Rcompile/CRANpkg/local/3.2/MASS.Rcheck' * using R version 3.2.5 (2016-04-14) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'MASS/DESCRIPTION' ... OK * this is package 'MASS' version '7.3-45' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MASS' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... [15s] OK ** checking differences from 'MASS-Ex_i386.Rout' to 'MASS-Ex.Rout.save' ... OK 578a579 > 589a591 > 603a606 > 870c873 < -2.42080779 -0.61510520 -0.03573836 0.81641138 2.15153498 --- > -2.42080780 -0.61510520 -0.03573836 0.81641138 2.15153499 1528c1531 < factor(subject)2 -3.021e-15 2.828e-01 0.000 1.000000 --- > factor(subject)2 -2.300e-15 2.828e-01 0.000 1.000000 2378c2381 < ContHigh -2.159e-16 1.690e-01 0.000 1.000000 --- > ContHigh -1.490e-15 1.690e-01 0.000 1.000000 3203c3206 < -3.631e+01 7.292e-01 4.167e-01 6.030e-18 --- > -3.631e+01 7.292e-01 4.167e-01 -8.131e-17 3366c3369 < 0.07776401 3.08304824 3.30137838 3.44562531 2.80464433 --- > 0.07776401 3.08304824 3.30137838 3.44562531 2.80464434 3368c3371 < 2.60835015 3.03357724 3.52301734 3.38711844 3.46709395 --- > 2.60835015 3.03357725 3.52301734 3.38711844 3.46709396 3370c3373 < 3.81438456 3.73878664 3.51332580 3.39741114 3.47088607 --- > 3.81438456 3.73878664 3.51332581 3.39741115 3.47088608 3372c3375 < 3.72895847 3.31863862 3.37938672 2.96452195 3.58468686 --- > 3.72895847 3.31863862 3.37938673 2.96452195 3.58468686 3374c3377 < 3.39628029 3.36998871 -2.96015461 --- > 3.39628029 3.36998872 -2.96015460 3397c3400 < Achieved convergence tolerance: 4.889e-06 --- > Achieved convergence tolerance: 4.923e-06 3533c3536 < (Intercept) 2.78706 (Intr) --- > (Intercept) 2.78707 (Intr) 3602c3605 < N:K 1 33.1 33.13 2.146 0.16865 --- > N:K 1 33.1 33.14 2.146 0.16865 3661c3664 < 54.02 57.45 60.77 50.12 50.52 56.35 --- > 54.03 57.45 60.77 50.12 50.52 56.35 3709c3712 < Nf 3 20020 6674 37.686 2.46e-12 *** --- > Nf 3 20020 6673 37.686 2.46e-12 *** 3727c3730 < Nf 3 20020 6674 37.686 2.46e-12 *** --- > Nf 3 20020 6673 37.686 2.46e-12 *** 3761c3764 < 104.50 109.79 97.62 --- > 104.50 109.79 97.63 5132c5135 < Achieved convergence tolerance: 4.354e-06 --- > Achieved convergence tolerance: 4.324e-06 Warning message: running command 'diff -bw "D:\temp\RtmpEpL3lI\Rdiffa214c4a4375fd" "D:\temp\RtmpEpL3lI\Rdiffb214c3bd65231"' had status 1 ** running examples for arch 'x64' ... [15s] OK ** checking differences from 'MASS-Ex_x64.Rout' to 'MASS-Ex.Rout.save' ... OK 578a579 > 589a591 > 603a606 > 3366c3369 < 0.07776401 3.08304824 3.30137838 3.44562531 2.80464433 --- > 0.07776401 3.08304824 3.30137838 3.44562531 2.80464434 3368c3371 < 2.60835015 3.03357724 3.52301734 3.38711844 3.46709395 --- > 2.60835015 3.03357725 3.52301734 3.38711844 3.46709396 3374c3377 < 3.39628029 3.36998871 -2.96015460 --- > 3.39628029 3.36998872 -2.96015460 3397c3400 < Achieved convergence tolerance: 4.92e-06 --- > Achieved convergence tolerance: 4.923e-06 Warning message: running command 'diff -bw "D:\temp\RtmpuodoLY\Rdiffa266445b87400" "D:\temp\RtmpuodoLY\Rdiffb266428c245a"' had status 1 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... [6s] OK Running 'confint.R' [1s] Running 'fitdistr.R' [0s] Comparing 'fitdistr.Rout' to 'fitdistr.Rout.save' ... OK Running 'glm.nb.R' [1s] Running 'hubers.R' [0s] Running 'lme.R' [1s] Running 'polr.R' [1s] Running 'profile.R' [0s] Running 'regression.R' [0s] Comparing 'regression.Rout' to 'regression.Rout.save' ... OK Running 'rlm.R' [1s] Running 'scripts.R' [0s] ** running tests for arch 'x64' ... [7s] OK Running 'confint.R' [1s] Running 'fitdistr.R' [0s] Comparing 'fitdistr.Rout' to 'fitdistr.Rout.save' ... OK Running 'glm.nb.R' [1s] Running 'hubers.R' [0s] Running 'lme.R' [1s] Running 'polr.R' [1s] Running 'profile.R' [1s] Running 'regression.R' [0s] Comparing 'regression.Rout' to 'regression.Rout.save' ... OK Running 'rlm.R' [1s] Running 'scripts.R' [0s] * checking PDF version of manual ... OK * DONE Status: OK