* using log directory 'd:/Rcompile/CRANpkg/local/3.2/MSeasy.Rcheck'
* using R version 3.2.5 (2016-04-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'MSeasy/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MSeasy' version '5.3.3'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
  'amap' 'clValid' 'cluster' 'fpc' 'mzR' 'xcms'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MSeasy' can be installed ... WARNING
Found the following significant warnings:
  Warning: 'loadRcppModules' is deprecated.
See 'd:/Rcompile/CRANpkg/local/3.2/MSeasy.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls to packages already attached by Depends:
  'amap' 'clValid' 'cluster' 'fpc' 'xcms'
  Please remove these calls from your code.
'library' or 'require' call to 'tcltk' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
  'mzR' 'xcms'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
MS.DataCreation: no visible global function definition for 'tclvalue'
MS.DataCreation: no visible global function definition for
  'tkchooseDirectory'
MS.clust: no visible global function definition for 'tk_choose.files'
MS.test.clust: no visible global function definition for
  'tk_choose.files'
MSeasyToARISTO: no visible global function definition for
  'tk_choose.files'
MSeasyToMSP: no visible global function definition for
  'tk_choose.files'
SearchNIST: no visible global function definition for 'tclvalue'
SearchNIST: no visible global function definition for
  'tkchooseDirectory'
SearchNIST: no visible global function definition for 'tk_choose.files'
trans.ASCII: no visible global function definition for 'tclvalue'
trans.ASCII: no visible global function definition for
  'tkchooseDirectory'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [14s] WARNING
Found the following significant warnings:

  Warning: 'loadRcppModules' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 4 NOTEs