* using log directory 'd:/Rcompile/CRANpkg/local/3.2/MSwM.Rcheck'
* using R version 3.2.5 (2016-04-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'MSwM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MSwM' version '1.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MSwM' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
[,MSM.fitted-character-missing-missing : .local: warning in switch(EXP
  = i, CondMean = return(x@CondMean), error = return(x@error), Likel =
  return(x@Likel), margLik = return(x@margLik), filtProb =
  return(x@filtProb), smoProb = return(x@smoProb), states =
  return(apply(x@smoProb, 1, which.max)), smoTransMat =
  return(x@smoTransMat), logLikel = return(x@logLikel), stop("Error:",
  i, "is not a MSM.fitted slot")): partial argument match of 'EXP' to
  'EXPR'
[,MSM.glm-character-missing-missing : .local: warning in switch(EXP =
  i, call = return(x@call), model = return(x@model), k = return(x@k),
  switch = return(x@switch), Coef = return(x@Coef), seCoef =
  return(x@seCoef), transMat = return(x@transMat), iniProb =
  return(x@iniProb), Fit = return(x@Fit), states =
  return(x@Fit["states"]), family = return(x@family), stop("Error:", i,
  "is not a MSM slot")): partial argument match of 'EXP' to 'EXPR'
[,MSM.lm-character-missing-missing : .local: warning in switch(EXP = i,
  call = return(x@call), model = return(x@model), k = return(x@k),
  switch = return(x@switch), Coef = return(x@Coef), seCoef =
  return(x@seCoef), std = return(x@std), transMat = return(x@transMat),
  iniProb = return(x@iniProb), Fit = return(x@Fit), states =
  return(x@Fit["states"]), stop("Error:", i, "is not a MSM slot")):
  partial argument match of 'EXP' to 'EXPR'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... [22s] OK
* checking re-building of vignette outputs ... [26s] OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs