* using log directory 'd:/Rcompile/CRANpkg/local/3.2/MetaPCA.Rcheck'
* using R version 3.2.5 (2016-04-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'MetaPCA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MetaPCA' version '0.1.4'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Packages suggested but not available for checking: 'doMC' 'doSMP'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MetaPCA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'foreach'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
':::' calls which should be '::':
  'pcaPP:::l1median_HoCr' 'pcaPP:::l1median_VaZh'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.MetaSparsePCA: no visible global function definition for '%do%'
.MetaSparsePCA: no visible global function definition for 'foreach'
.MetaSparsePCA: no visible global function definition for 'iter'
DropDupGenes: no visible global function definition for 'registerDoMC'
DropDupGenes: no visible global function definition for 'startWorkers'
DropDupGenes: no visible global function definition for 'registerDoSMP'
DropDupGenes: no visible global function definition for '%dopar%'
DropDupGenes: no visible global function definition for 'foreach'
DropDupGenes: no visible global function definition for 'iter'
DropDupGenes: no visible global function definition for 'stopWorkers'
MetaPCA: no visible global function definition for 'PCAgrid'
PlotPC2D: no visible global function definition for 'cov.mve'
PlotPC2D: no visible global function definition for 'ellipse'
PreprocessMetaAnalysis: no visible global function definition for
  '%do%'
PreprocessMetaAnalysis: no visible global function definition for
  'foreach'
PreprocessMetaAnalysis: no visible global function definition for
  'iter'
PreprocessMetaAnalysis: no visible binding for global variable 'dat'
PreprocessMetaAnalysis: no visible global function definition for
  'impute.knn'
requireAll: no visible global function definition for 'biocLite'
* checking Rd files ... NOTE
prepare_Rd: DropDupGenes.Rd:29-31: Dropping empty section \details
prepare_Rd: DropDupGenes.Rd:41-43: Dropping empty section \note
prepare_Rd: DropDupGenes.Rd:47-49: Dropping empty section \seealso
prepare_Rd: MetaPCA-package.Rd:29-30: Dropping empty section \seealso
prepare_Rd: MetaPCA.Rd:76-78: Dropping empty section \details
prepare_Rd: MetaPCA.Rd:88-90: Dropping empty section \note
prepare_Rd: MetaPCA.Rd:94-96: Dropping empty section \seealso
prepare_Rd: PlotPC2D.Rd:80-82: Dropping empty section \details
prepare_Rd: PlotPC2D.Rd:92-94: Dropping empty section \note
prepare_Rd: PlotPC2D.Rd:98-100: Dropping empty section \seealso
prepare_Rd: PreprocessMetaAnalysis.Rd:39-41: Dropping empty section \details
prepare_Rd: PreprocessMetaAnalysis.Rd:51-53: Dropping empty section \note
prepare_Rd: PreprocessMetaAnalysis.Rd:57-59: Dropping empty section \seealso
prepare_Rd: requireAll.Rd:19-21: Dropping empty section \details
prepare_Rd: requireAll.Rd:31-33: Dropping empty section \note
prepare_Rd: requireAll.Rd:25-27: Dropping empty section \references
prepare_Rd: requireAll.Rd:37-39: Dropping empty section \seealso
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [1s] OK
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs