* using log directory 'd:/Rcompile/CRANpkg/local/3.2/PKgraph.Rcheck'
* using R version 3.2.5 (2016-04-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'PKgraph/DESCRIPTION' ... OK
* this is package 'PKgraph' version '1.7'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
  'RGtk2' 'gWidgetsRGtk2' 'cairoDevice' 'lattice' 'rggobi' 'ggplot2'
  'proto'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PKgraph' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  'RGtk2' 'gWidgetsRGtk2'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'cairoDevice'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ErrorMessage: no visible global function definition for 'gmessage'
PKgraph: no visible global function definition for 'gwindow'
PKgraph: no visible global function definition for 'gmenu'
PKgraph: no visible global function definition for 'gtoolbar'
PKgraph: no visible global function definition for 'ggroup'
PKgraph: no visible global function definition for 'gnotebook'
PKgraph: no visible global function definition for 'gpanedgroup'
PKgraph: no visible global function definition for 'glabel'
PKgraph: no visible global function definition for 'gtable'
PKgraph: no visible global function definition for 'gstatusbar'
checkforPKModel: no visible global function definition for 'gmessage'
cleanFigureButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
com.hist.okButtonHandler: no visible global function definition for
  'ggraphics'
com.hist.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
com.hist.okButtonHandler.0125: no visible global function definition
  for 'ggraphics'
com.hist.okButtonHandler.0125: no visible binding for global variable
  'pk.dialog.notebook'
com.map.okButtonHandler: no visible global function definition for
  'gtable'
com.scatter.okButtonHandler: no visible global function definition for
  'ggraphics'
com.scatter.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
com.scatter.okButtonHandler.0125: no visible global function definition
  for 'ggraphics'
com.scatter.okButtonHandler.0125: no visible binding for global
  variable 'pk.dialog.notebook'
com.time.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
com.time.okButtonHandler: no visible global function definition for
  'ggraphics'
com.time.okButtonHandler.back: no visible global function definition
  for 'ggraphics'
com.time.okButtonHandler.back: no visible binding for global variable
  'pk.dialog.notebook'
compare.pred.ggobiImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
configDataHandler: no visible global function definition for 'gmessage'
configDirHandler: no visible global function definition for 'gfile'
configFigureHandler: no visible global function definition for
  'gwindow'
configFigureHandler: no visible global function definition for 'ggroup'
configFigureHandler: no visible global function definition for 'gframe'
configFigureHandler: no visible global function definition for
  'glayout'
configFigureHandler: no visible global function definition for 'glabel'
configFigureHandler: no visible global function definition for 'gedit'
configFigureHandler: no visible global function definition for
  'gcheckboxgroup'
configFigureHandler: no visible global function definition for
  'gbutton'
configFormatHandler: no visible global function definition for
  'gwindow'
configFormatHandler: no visible global function definition for 'ggroup'
configFormatHandler: no visible global function definition for 'gframe'
configFormatHandler: no visible global function definition for
  'glayout'
configFormatHandler: no visible global function definition for 'glabel'
configFormatHandler: no visible global function definition for
  'gcheckboxgroup'
configFormatHandler: no visible global function definition for 'gedit'
configFormatHandler: no visible global function definition for
  'gbutton'
getPKMatrixplotCall: no visible global function definition for
  'plotmatrix'
getScatterCall: no visible global function definition for 'opts'
ggobi.diagose: no visible global function definition for 'gwindow'
ggobi.diagose: no visible global function definition for 'ggroup'
ggobi.diagose: no visible global function definition for 'glabel'
ggobi.diagose: no visible global function definition for 'gframe'
ggobi.diagose: no visible global function definition for 'glayout'
ggobi.diagose: no visible global function definition for 'gdroplist'
ggobi.diagose: no visible global function definition for 'gbutton'
ggobi.diagose: no visible global function definition for 'gtable'
ggobi.diagose: no visible global function definition for 'gpanedgroup'
ggobi.map: no visible global function definition for 'gwindow'
ggobi.map: no visible global function definition for 'ggroup'
ggobi.map: no visible global function definition for 'gframe'
ggobi.map: no visible global function definition for 'glayout'
ggobi.map: no visible global function definition for 'gdroplist'
ggobi.map: no visible global function definition for 'gbutton'
ggobiPlotType: no visible global function definition for 'gwindow'
ggobiPlotType: no visible global function definition for 'ggroup'
ggobiPlotType: no visible global function definition for 'gframe'
ggobiPlotType: no visible global function definition for 'glayout'
ggobiPlotType: no visible global function definition for 'gdroplist'
ggobiPlotType: no visible global function definition for 'gbutton'
model.cov.okButtonHandler: no visible global function definition for
  'ggraphics'
model.cov.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
model.ggobiImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
model.gof.okButtonHandler: no visible global function definition for
  'ggraphics'
model.gof.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
model.ind.okButtonHandler: no visible global function definition for
  'ggraphics'
model.ind.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
model.para.okButtonHandler: no visible global function definition for
  'ggraphics'
model.para.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
model.random.okButtonHandler: no visible global function definition for
  'ggraphics'
model.random.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
model.resid.okButtonHandler: no visible global function definition for
  'ggraphics'
model.resid.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
model.struct.okButtonHandler: no visible global function definition for
  'ggraphics'
model.struct.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
openDataHandler: no visible global function definition for 'gwindow'
openDataHandler: no visible global function definition for 'ggroup'
openDataHandler: no visible global function definition for 'gframe'
openDataHandler: no visible global function definition for 'glayout'
openDataHandler: no visible global function definition for 'glabel'
openDataHandler: no visible global function definition for 'gdroplist'
openDataHandler: no visible global function definition for 'gbutton'
openDataHandler : <anonymous>: no visible global function definition
  for 'gtable'
openDataHandler : <anonymous>: no visible global function definition
  for 'gfile'
openDataHandler : <anonymous> : <anonymous>: no visible binding for
  '<<-' assignment to 'test'
openDataHandler : <anonymous> : <anonymous>: no visible binding for
  global variable 'test'
openDataHandler : <anonymous> : <anonymous>: no visible global function
  definition for 'gtable'
pk.boot.sum: no visible global function definition for 'gmessage'
pk.boot.vis: no visible global function definition for 'gmessage'
pk.factor: no visible global function definition for 'gmessage'
pk.heat.menu: no visible global function definition for 'gmessage'
pk.matrix.menu: no visible global function definition for 'gmessage'
pk.model.cov: no visible global function definition for 'gmessage'
pk.model.gof: no visible global function definition for 'gmessage'
pk.model.ind: no visible global function definition for 'gmessage'
pk.model.para: no visible global function definition for 'gmessage'
pk.model.random: no visible global function definition for 'gmessage'
pk.model.resid: no visible global function definition for 'gmessage'
pk.model.struct: no visible global function definition for 'gmessage'
pk.outlier.psn: no visible global function definition for 'gmessage'
pk.outlier.vis: no visible global function definition for 'gmessage'
pk.para.menu: no visible global function definition for 'gmessage'
pk.sim: no visible global function definition for 'gmessage'
pk.time.menu: no visible global function definition for 'gmessage'
pk.tri.menu: no visible global function definition for 'gmessage'
project.restore: no visible global function definition for 'gfile'
project.restore : <anonymous> : <anonymous>: no visible global function
  definition for 'gtable'
psn.bootstrap: no visible binding for global variable
  'minimization.successful'
psn.bootstrap: no visible binding for global variable
  'covariance.step.successful'
psn.bootstrap: no visible binding for global variable
  'covariance.step.warnings'
psn.bootstrap: no visible binding for global variable
  'estimate.near.boundary'
psn.bootstrap: no visible global function definition for 'ggraphics'
psn.bootstrap: no visible binding for global variable
  'pk.dialog.notebook'
psn.bootstrap.sum.okButtonHandler: no visible binding for global
  variable 'pk.dialog.notebook'
psn.bootstrap.sum.okButtonHandler: no visible binding for global
  variable 'minimization.successful'
psn.bootstrap.sum.okButtonHandler: no visible binding for global
  variable 'covariance.step.successful'
psn.bootstrap.sum.okButtonHandler: no visible binding for global
  variable 'covariance.step.warnings'
psn.bootstrap.sum.okButtonHandler: no visible binding for global
  variable 'estimate.near.boundary'
psn.bootstrap.sum.okButtonHandler: no visible global function
  definition for 'ggraphics'
psn.bootstrap.vis.okButtonHandler: no visible global function
  definition for 'gwindow'
psn.bootstrap.vis.okButtonHandler: no visible global function
  definition for 'ggroup'
psn.bootstrap.vis.okButtonHandler: no visible global function
  definition for 'ggraphics'
psn.bootstrap.vis.okButtonHandler: no visible binding for global
  variable 'pk.dialog.notebook'
psn.bootstrap.vis.okButtonHandler: no visible binding for global
  variable 'ID'
psn.bootstrap.vis.okButtonHandler: no visible binding for global
  variable 'resampleID'
psn.bootstrap.vis.okButtonHandler: no visible binding for global
  variable 'para'
psn.bootstrap.vis.okButtonHandler: no visible binding for global
  variable 'VAR'
psn.cdd: no visible binding for global variable
  'minimization.successful'
psn.cdd: no visible binding for global variable
  'covariance.step.successful'
psn.cdd: no visible binding for global variable
  'covariance.step.warnings'
psn.cdd: no visible binding for global variable
  'estimate.near.boundary'
psn.cdd: no visible binding for global variable 'outside.n.sd'
psn.outlier.okButtonHandler: no visible global function definition for
  'ggraphics'
psn.outlier.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
psn.outlier.okButtonHandler: no visible binding for global variable
  'ID'
psn.outlier.okButtonHandler: no visible binding for global variable
  'cook.scores'
psn.outlier.okButtonHandler: no visible binding for global variable
  'cov.ratios'
restoreHandler: no visible global function definition for 'gfile'
restoreHandler : <anonymous> : <anonymous>: no visible global function
  definition for 'gtable'
saveHandler: no visible global function definition for 'gfile'
saveImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
saveImageHandler: no visible global function definition for 'gfile'
saveImageHandler.matrix: no visible binding for global variable
  'pk.dialog.notebook'
saveImageHandler.matrix: no visible global function definition for
  'gfile'
saveImageHandler.pkmodel: no visible binding for global variable
  'pk.dialog.notebook'
saveImageHandler.pkmodel: no visible global function definition for
  'gfile'
saveProjectHandler: no visible global function definition for 'gfile'
selectDataDialog: no visible global function definition for 'gmessage'
selectDataDialog: no visible global function definition for 'gwindow'
selectDataDialog: no visible global function definition for 'ggroup'
selectDataDialog: no visible global function definition for 'glabel'
selectDataDialog: no visible global function definition for 'gframe'
selectDataDialog: no visible global function definition for 'gtable'
selectDataDialog: no visible global function definition for 'gbutton'
selectDataDialog: no visible global function definition for
  'addHandlerClicked'
setHandler: no visible global function definition for 'gfile'
subset.okButtonHandler: no visible global function definition for
  'gwindow'
subset.okButtonHandler: no visible global function definition for
  'gframe'
subset.okButtonHandler: no visible global function definition for
  'glayout'
subset.okButtonHandler: no visible global function definition for
  'gdroplist'
subset.okButtonHandler: no visible global function definition for
  'gedit'
subset.okButtonHandler: no visible global function definition for
  'gbutton'
subset.okButtonHandler : <anonymous>: no visible global function
  definition for 'gtable'
summary.bi.ggobiImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
summary.bi.okButtonHandler: no visible global function definition for
  'ggraphics'
summary.bi.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
summary.heat.okButtonHandler: no visible global function definition for
  'ggraphics'
summary.heat.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
summary.matrix.ggobiImageHandler: no visible binding for global
  variable 'pk.dialog.notebook'
summary.matrix.okButtonHandler: no visible global function definition
  for 'ggraphics'
summary.matrix.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
summary.para.ggobiImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
summary.para.okButtonHandler: no visible global function definition for
  'ggraphics'
summary.para.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
summary.tri.okButtonHandler: no visible global function definition for
  'ggraphics'
summary.tri.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
summary.uni.ggobiImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
summary.uni.okButtonHandler: no visible global function definition for
  'ggraphics'
summary.uni.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
translateList: no visible global function definition for 'gmessage'
val.okButtonHandler: no visible global function definition for
  'ggraphics'
val.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
validation.ggobiImageHandler: no visible binding for global variable
  'pk.dialog.notebook'
vis.outlier.okButtonHandler: no visible global function definition for
  'gwindow'
vis.outlier.okButtonHandler: no visible global function definition for
  'ggroup'
vis.outlier.okButtonHandler: no visible global function definition for
  'ggraphics'
vis.outlier.okButtonHandler: no visible binding for global variable
  'pk.dialog.notebook'
vis.outlier.okButtonHandler: no visible binding for global variable
  'runID'
vis.outlier.okButtonHandler: no visible binding for global variable
  'deleteID'
vis.outlier.okButtonHandler: no visible binding for global variable
  'ID'
vis.outlier.okButtonHandler: no visible binding for global variable
  'para'
vis.outlier.okButtonHandler: no visible binding for global variable
  'resampleID'
vis.outlier.okButtonHandler: no visible global function definition for
  'namerows'
vis.outlier.okButtonHandler: no visible global function definition for
  'melt'
vis.outlier.okButtonHandler: no visible global function definition for
  'ddply'
vis.outlier.okButtonHandler: no visible binding for global variable
  'variable'
vis.outlier.okButtonHandler: no visible global function definition for
  'rescaler'
vis.outlier.okButtonHandler: no visible binding for global variable
  'value'
vis.outlier.okButtonHandler: no visible binding for global variable
  'rng'
vis.outlier.okButtonHandler: no visible binding for global variable
  'cor1'
vis.outlier.okButtonHandler: no visible binding for global variable
  'cor2'
* checking Rd files ... NOTE
prepare_Rd: PKgraph.Rd:11-13: Dropping empty section \arguments
prepare_Rd: PKgraph.Rd:17-19: Dropping empty section \examples
prepare_Rd: pkdata.Rd:9-11: Dropping empty section \format
prepare_Rd: pkdata.Rd:14-16: Dropping empty section \examples
prepare_Rd: pkdata2.Rd:9-11: Dropping empty section \format
prepare_Rd: pkdata2.Rd:14-16: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... [0s] OK
* checking re-building of vignette outputs ... [10s] OK
* checking PDF version of manual ... OK
* DONE
Status: 5 NOTEs