* using log directory 'd:/Rcompile/CRANpkg/local/3.2/RSiena.Rcheck'
* using R version 3.2.5 (2016-04-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'RSiena/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RSiena' version '1.1-232'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RSiena' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  'MASS' 'codetools' 'lattice' 'network' 'parallel' 'tcltk' 'xtable'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Unexported object imported by a ':::' call: 'utils:::edit.data.frame'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
AnnouncePhase: no visible global function definition for 'tkdelete'
AnnouncePhase: no visible global function definition for 'tkinsert'
AnnouncePhase: no visible global function definition for 'tkconfigure'
DisplayDeviations: no visible global function definition for 'tkdelete'
DisplayDeviations: no visible global function definition for 'tkinsert'
DisplayIteration: no visible global function definition for 'tkdelete'
DisplayIteration: no visible global function definition for 'tkinsert'
DisplayIteration: no visible global function definition for 'tcl'
DisplayTheta: no visible global function definition for 'tkdelete'
DisplayTheta: no visible global function definition for 'tkinsert'
DisplayThetaAutocor: no visible global function definition for
  'tkdelete'
DisplayThetaAutocor: no visible global function definition for
  'tkinsert'
FiniteDifferences: no visible global function definition for
  'clusterCall'
createEffects: no visible binding for global variable 'allEffects'
createProgressBar: no visible global function definition for
  'tkconfigure'
doIterations: no visible global function definition for 'clusterCall'
doPhase1or3Iterations: no visible global function definition for
  'clusterCall'
effectsDocumentation: no visible binding for global variable
  'allEffects'
getInternals : <anonymous>: no visible global function definition for
  'findGlobals'
getInternals : <anonymous>: no visible global function definition for
  'findLocals'
getProgressBar: no visible global function definition for 'tclvalue'
getProgressBar: no visible global function definition for 'tkcget'
getRSienaRDocumentation : <anonymous>: no visible global function
  definition for 'findGlobals'
getRSienaRDocumentation : <anonymous>: no visible global function
  definition for 'findLocals'
maxlikec: no visible global function definition for 'parRapply'
networkExtraction: no visible global function definition for
  'network.initialize'
networkExtraction: no visible global function definition for
  'network.edgelist'
networkExtraction: no visible global function definition for 'network'
phase2.1: no visible global function definition for 'tkconfigure'
plot.sienaGOF: no visible global function definition for
  'trellis.par.get'
plot.sienaGOF: no visible global function definition for
  'trellis.par.set'
plot.sienaGOF : panelFunction: no visible global function definition
  for 'panel.violin'
plot.sienaGOF : panelFunction: no visible global function definition
  for 'panel.bwplot'
plot.sienaGOF : panelFunction: no visible global function definition
  for 'panel.xyplot'
plot.sienaGOF : panelFunction: no visible global function definition
  for 'panel.text'
plot.sienaGOF: no visible global function definition for 'bwplot'
plot.sienaMeta: no visible global function definition for 'xyplot'
plot.sienaMeta : <anonymous>: no visible global function definition for
  'panel.xyplot'
plot.sienaMeta : <anonymous>: no visible global function definition for
  'panel.abline'
plot.sienaTimeTest: no visible global function definition for 'xyplot'
plot.sienaTimeTest : <anonymous> : <anonymous>: no visible global
  function definition for 'panel.xyplot'
plot.sienaTimeTest : <anonymous>: no visible global function definition
  for 'panel.xyplot'
plot.sienaTimeTest : <anonymous>: no visible global function definition
  for 'panel.abline'
readInFiles: no visible global function definition for 'read.paj'
robmon: no visible global function definition for 'tkconfigure'
robmon: no visible global function definition for 'makeCluster'
robmon: no visible global function definition for 'clusterCall'
robmon: no visible global function definition for 'clusterSetRNGStream'
robmon: no visible global function definition for 'tkdelete'
sessionFromFile: no visible global function definition for
  'tkmessageBox'
setProgressBar: no visible global function definition for 'tkconfigure'
setProgressBar: no visible global function definition for 'tcl'
siena01Gui : addFile: no visible global function definition for
  'tclvalue'
siena01Gui : addFile: no visible global function definition for
  'tkgetOpenFile'
siena01Gui : addFile: no visible global function definition for
  'as.tclObj'
siena01Gui : addFile: no visible global function definition for 'tkset'
siena01Gui : addFile: no visible global function definition for 'tcl'
siena01Gui : addTableRow: no visible global function definition for
  'tkinsert'
siena01Gui : addTableRow: no visible global function definition for
  'tkwidget'
siena01Gui : addTableRow: no visible global function definition for
  'tkwindow.configure'
siena01Gui : addTableRow: no visible global function definition for
  'tkbind'
siena01Gui : addTableRow : <anonymous>: no visible global function
  definition for 'tcl'
siena01Gui : addTableRow: no visible global function definition for
  'tkconfigure'
siena01Gui : applyFn: no visible global function definition for
  'tkmessageBox'
siena01Gui : applyFn: no visible global function definition for
  'tclvalue'
siena01Gui : clearFn : <anonymous>: no visible global function
  definition for 'tkset'
siena01Gui : deleteTableRow: no visible global function definition for
  'tkwindow.configure'
siena01Gui : deleteTableRow: no visible global function definition for
  'tcl'
siena01Gui : deleteTableRow: no visible global function definition for
  'tkdelete'
siena01Gui : editFile: no visible global function definition for
  'tclvalue'
siena01Gui : editFile: no visible global function definition for 'tcl'
siena01Gui : editFile: no visible global function definition for
  'tkmessageBox'
siena01Gui : editFile: no visible global function definition for
  'tkfocus'
siena01Gui : fromFileFn: no visible global function definition for
  'tclvalue'
siena01Gui : fromFileFn: no visible global function definition for
  'tkgetOpenFile'
siena01Gui : fromFileContFn: no visible global function definition for
  'tkmessageBox'
siena01Gui : myStop: no visible global function definition for
  'tkmessageBox'
siena01Gui : myStop: no visible global function definition for
  'tclvalue'
siena01Gui : myStop: no visible global function definition for
  'tkdestroy'
siena01Gui : procSession: no visible global function definition for
  'as.tclObj'
siena01Gui : procSession: no visible global function definition for
  'tkset'
siena01Gui : procSession: no visible global function definition for
  'tcl'
siena01Gui : removeFile: no visible global function definition for
  'tclvalue'
siena01Gui : removeFile: no visible global function definition for
  'tcl'
siena01Gui : removeFile: no visible global function definition for
  'tkmessageBox'
siena01Gui : saveFn: no visible global function definition for
  'tkmessageBox'
siena01Gui : saveFn: no visible global function definition for
  'tclvalue'
siena01Gui : saveFn: no visible global function definition for
  'tkgetSaveFile'
siena01Gui : savefileFn: no visible global function definition for
  'tclvalue'
siena01Gui : savefileFn: no visible global function definition for
  'tkgetSaveFile'
siena01Gui : sessionFromTcl: no visible global function definition for
  'tclvalue'
siena01Gui : sessionFromTcl: no visible global function definition for
  'tkconfigure'
siena01Gui : sessionFromTcl: no visible global function definition for
  'as.tclObj'
siena01Gui : sessionFromTcl: no visible global function definition for
  'tkget'
siena01Gui : modelFromTcl: no visible global function definition for
  'tclvalue'
siena01Gui : sienaModelOptions : editFn: no visible global function
  definition for 'tclvalue'
siena01Gui : sienaModelOptions : editFn: no visible global function
  definition for 'tcl'
siena01Gui : sienaModelOptions : estimateFn: no visible global function
  definition for 'tclvalue'
siena01Gui : sienaModelOptions : estimateFn: no visible global function
  definition for 'tkmessageBox'
siena01Gui : sienaModelOptions : estimateFn: no visible global function
  definition for 'tcl'
siena01Gui : sienaModelOptions : estimateFn: no visible global function
  definition for 'tkfocus'
siena01Gui : sienaModelOptions : estimateFn: no visible global function
  definition for 'tksearch'
siena01Gui : sienaModelOptions : estimateFn: no visible global function
  definition for 'tkyview'
siena01Gui : sienaModelOptions : randomseedFn: no visible global
  function definition for 'tclvalue'
siena01Gui : sienaModelOptions : randomseedFn: no visible global
  function definition for 'tkgrid.forget'
siena01Gui : sienaModelOptions : randomseedFn: no visible global
  function definition for 'tclvalue<-'
siena01Gui : sienaModelOptions : randomseedFn: no visible global
  function definition for 'tkgrid'
siena01Gui : sienaModelOptions : clustersFn: no visible global function
  definition for 'tclvalue'
siena01Gui : sienaModelOptions : clustersFn: no visible global function
  definition for 'tkgrid.forget'
siena01Gui : sienaModelOptions : clustersFn: no visible global function
  definition for 'tclvalue<-'
siena01Gui : sienaModelOptions : clustersFn: no visible global function
  definition for 'tkgrid'
siena01Gui : sienaModelOptions : returnFn: no visible global function
  definition for 'tkmessageBox'
siena01Gui : sienaModelOptions : returnFn: no visible global function
  definition for 'tclvalue'
siena01Gui : sienaModelOptions : returnFn: no visible global function
  definition for 'tkpack.forget'
siena01Gui : sienaModelOptions : returnFn: no visible global function
  definition for 'tkpack'
siena01Gui : sienaModelOptions : showFn: no visible global function
  definition for 'tcl'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tclclose'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tkpack.forget'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tclopen'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tkpack'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tkconfigure'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tkgrid'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tkgrid.configure'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tkdelete'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tkinsert'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tclread'
siena01Gui : sienaModelOptions : resultsFn: no visible global function
  definition for 'tkfocus'
siena01Gui : sienaModelOptions : saveresultsFn: no visible global
  function definition for 'tkmessageBox'
siena01Gui : sienaModelOptions : saveresultsFn: no visible global
  function definition for 'tclvalue'
siena01Gui : sienaModelOptions : saveresultsFn: no visible global
  function definition for 'tkgetSaveFile'
siena01Gui : sienaModelOptions : screenFromModel: no visible global
  function definition for 'tclvalue<-'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkpack.forget'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkframe'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkpack'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkwidget'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkscrollbar'
siena01Gui : sienaModelOptions : <anonymous>: no visible global
  function definition for 'tkxview'
siena01Gui : sienaModelOptions : <anonymous>: no visible global
  function definition for 'tkyview'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tktext'
siena01Gui : sienaModelOptions : <anonymous>: no visible global
  function definition for 'tkset'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkgrid.configure'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tclVar'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tclvalue<-'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'ttkcombobox'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tklabel'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkgrid'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkentry'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkcheckbutton'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tclArray'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tcl'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'as.tclObj'
siena01Gui : sienaModelOptions: no visible global function definition
  for 'tkbutton'
siena01Gui: no visible global function definition for 'tclRequire'
siena01Gui: no visible global function definition for 'tktoplevel'
siena01Gui: no visible global function definition for 'tkwm.resizable'
siena01Gui: no visible global function definition for 'tkwm.title'
siena01Gui: no visible global function definition for 'tkbind'
siena01Gui: no visible global function definition for 'tkmenu'
siena01Gui: no visible global function definition for 'tkconfigure'
siena01Gui: no visible global function definition for 'tkadd'
siena01Gui : <anonymous>: no visible global function definition for
  'tkdestroy'
siena01Gui: no visible global function definition for 'tkframe'
siena01Gui: no visible global function definition for 'tkpack'
siena01Gui: no visible global function definition for 'tkbutton'
siena01Gui: no visible global function definition for 'tkgrid'
siena01Gui: no visible global function definition for 'tkwidget'
siena01Gui: no visible global function definition for 'tclArray'
siena01Gui: no visible global function definition for 'tkscrollbar'
siena01Gui : <anonymous>: no visible global function definition for
  'tkxview'
siena01Gui : <anonymous>: no visible global function definition for
  'tkyview'
siena01Gui : <anonymous>: no visible global function definition for
  'tkset'
siena01Gui: no visible global function definition for 'tcl'
siena01Gui: no visible global function definition for 'as.tclObj'
siena01Gui : <anonymous>: no visible global function definition for
  'tkwidget'
siena01Gui : <anonymous>: no visible global function definition for
  'tkwindow.configure'
siena01Gui : <anonymous>: no visible global function definition for
  'tkbind'
siena01Gui : <anonymous> : <anonymous>: no visible global function
  definition for 'tcl'
siena01Gui : <anonymous> : <anonymous>: no visible global function
  definition for 'tkXselection.own'
siena01Gui: no visible global function definition for 'tkfocus'
siena07 : exitfn: no visible global function definition for 'tkdestroy'
siena07: no visible global function definition for 'stopCluster'
siena07Gui: no visible global function definition for 'tktoplevel'
siena07Gui: no visible global function definition for 'tkwm.title'
siena07Gui: no visible global function definition for 'tkframe'
siena07Gui: no visible global function definition for 'tkpack'
siena07Gui: no visible global function definition for 'tkbutton'
siena07Gui: no visible global function definition for
  'tkgrid.configure'
siena07Gui: no visible global function definition for 'tklabel'
siena07Gui: no visible global function definition for 'tkentry'
siena07Gui: no visible global function definition for 'ttkprogressbar'
siena07Gui: no visible global function definition for 'tktext'
siena07Gui: no visible global function definition for 'tclVar'
siena07Gui: no visible global function definition for 'tcl'
siena07Gui: no visible global function definition for 'tkinsert'
siena07Gui: no visible global function definition for 'tkgrab.set'
siena07Gui: no visible global function definition for 'tkfocus'
sienaDataCreateFromSession : validateNamesession: no visible binding
  for global variable 'network.size'
sienaDataCreateFromSession : validateNamesession: no visible global
  function definition for 'network.size'
sienaDataCreateFromSession: no visible global function definition for
  'network.size'
sienaDataCreateFromSession: no visible global function definition for
  'as.matrix.network'
sienaDataCreateFromSession: no visible global function definition for
  'list.edge.attributes'
sienaDataCreateFromSession: no visible global function definition for
  'get.edge.value'
sienaDataCreateFromSession: no visible global function definition for
  'is.directed'
sienaDataCreateFromSession: no visible global function definition for
  'tkmessageBox'
sienaGOF : <anonymous>: no visible global function definition for
  'parSapply'
sienaGOF : applyTest: no visible global function definition for
  'cov.rob'
sienaGOF : applyTest: no visible global function definition for 'ginv'
sienaGOF : <anonymous>: no visible global function definition for
  'ginv'
sienaGOF : <anonymous>: no visible global function definition for
  'cov.rob'
sienaGOF: no visible global function definition for 'ginv'
tkErrorMessage: no visible global function definition for
  'tkmessageBox'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [12s] OK
** running examples for arch 'x64' ... [11s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ... [25s] OK
  Running 'parallel.R' [24s]
  Comparing 'parallel.Rout' to 'parallel.Rout.save' ...145c145
< Version 1.13.0 created on 2015-08-31.
---
> Version 1.7.2 created on March 15, 2013.
147c147
<                     Mark S. Handcock, University of California -- Los Angeles
---
>                     Mark S. Handcock, University of Washington
150d149
<                     Skye Bender-deMoll, University of Washington
  Running 'scripts.R' [1s]
  Comparing 'scripts.Rout' to 'scripts.Rout.save' ... OK
** running tests for arch 'x64' ... [24s] OK
  Running 'parallel.R' [23s]
  Comparing 'parallel.Rout' to 'parallel.Rout.save' ...145c145
< Version 1.13.0 created on 2015-08-31.
---
> Version 1.7.2 created on March 15, 2013.
147c147
<                     Mark S. Handcock, University of California -- Los Angeles
---
>                     Mark S. Handcock, University of Washington
150d149
<                     Skye Bender-deMoll, University of Washington
  Running 'scripts.R' [1s]
  Comparing 'scripts.Rout' to 'scripts.Rout.save' ... OK
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs