* using log directory 'd:/Rcompile/CRANpkg/local/3.2/Rsomoclu.Rcheck'
* using R version 3.2.5 (2016-04-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'Rsomoclu/DESCRIPTION' ... OK
* this is package 'Rsomoclu' version '1.7.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Rsomoclu' can be installed ... WARNING
Found the following significant warnings:
  Warning: replacing previous import 'kohonen::somgrid' by 'class::somgrid' when loading 'Rsomoclu'
See 'd:/Rcompile/CRANpkg/local/3.2/Rsomoclu.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'Rsomoclu-Ex.R' failed
The error most likely occurred in:

> ### Name: Rsomoclu.kohonen
> ### Title: convert Somoclu train result to kohonen class for plotting
> ### Aliases: Rsomoclu.kohonen
> 
> ### ** Examples
> 
> library('Rsomoclu')
> library('kohonen')
> data_file <- system.file("data", "rgbs.txt.gz", package = 'Rsomoclu')
> input_data <- read.table(data_file)
> input_data <- data.matrix(input_data)
> nSomX <- 20
> nSomY <- 20
> nEpoch <- 10
> radius0 <- 0
> radiusN <- 0
> radiusCooling <- "linear"
> scale0 <- 0
> scaleN <- 0.01
> scaleCooling <- "linear"
> kernelType <- 0
> mapType <- "planar"
> gridType <- "rectangular"
> compactSupport <- FALSE
> codebook <- NULL
> neighborhood <- "gaussian"
> stdCoeff <- 0.5
> res <- Rsomoclu.train(input_data, nEpoch, nSomX, nSomY,
+                       radius0, radiusN,
+                       radiusCooling, scale0, scaleN,
+                       scaleCooling,
+                       kernelType, mapType, gridType, compactSupport, 
+                       neighborhood, stdCoeff, codebook)
> ## Convert to kohonen object for plotting
> sommap = Rsomoclu.kohonen(input_data, res)
Error in if (maxNA.fraction > 0L) { : argument is of length zero
Calls: Rsomoclu.kohonen -> map -> map.kohonen -> getnNA
Execution halted
** running examples for arch 'x64' ... ERROR
Running examples in 'Rsomoclu-Ex.R' failed
The error most likely occurred in:

> ### Name: Rsomoclu.kohonen
> ### Title: convert Somoclu train result to kohonen class for plotting
> ### Aliases: Rsomoclu.kohonen
> 
> ### ** Examples
> 
> library('Rsomoclu')
> library('kohonen')
> data_file <- system.file("data", "rgbs.txt.gz", package = 'Rsomoclu')
> input_data <- read.table(data_file)
> input_data <- data.matrix(input_data)
> nSomX <- 20
> nSomY <- 20
> nEpoch <- 10
> radius0 <- 0
> radiusN <- 0
> radiusCooling <- "linear"
> scale0 <- 0
> scaleN <- 0.01
> scaleCooling <- "linear"
> kernelType <- 0
> mapType <- "planar"
> gridType <- "rectangular"
> compactSupport <- FALSE
> codebook <- NULL
> neighborhood <- "gaussian"
> stdCoeff <- 0.5
> res <- Rsomoclu.train(input_data, nEpoch, nSomX, nSomY,
+                       radius0, radiusN,
+                       radiusCooling, scale0, scaleN,
+                       scaleCooling,
+                       kernelType, mapType, gridType, compactSupport, 
+                       neighborhood, stdCoeff, codebook)
> ## Convert to kohonen object for plotting
> sommap = Rsomoclu.kohonen(input_data, res)
Error in if (maxNA.fraction > 0L) { : argument is of length zero
Calls: Rsomoclu.kohonen -> map -> map.kohonen -> getnNA
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ... ERROR
Running the tests in 'tests/R_interface_test.R' failed.
Last 13 lines of output:
  [43,] 5.035841e-03 1.305773e-02 1.658310e-02 9.804307e-03 8.633234e-03
  [44,] 1.558965e-02 1.184474e-02 4.408542e-03 2.627651e-04 1.862645e-10
  [45,] 1.450713e-02 4.311038e-03 2.330044e-10 2.328306e-10 1.862645e-10
  [46,] 1.211147e-02 4.002075e-03 4.806931e-14 3.322632e-26 3.611281e-38
  [47,] 1.122478e-02 7.034095e-03 2.624495e-12 1.814681e-24 2.006943e-36
  [48,] 9.293744e-03 9.075298e-03 1.432926e-10 9.907823e-23 1.096098e-34
  [49,] 9.187630e-03 9.183498e-03 8.730725e-09 5.409489e-21 5.984537e-33
  [50,] 9.798002e-03 9.797907e-03 1.396504e-08 8.652331e-21 9.970943e-33
  > library('kohonen')
  > sommap = Rsomoclu.kohonen(input_data, res)
  Error in if (maxNA.fraction > 0L) { : argument is of length zero
  Calls: Rsomoclu.kohonen -> map -> map.kohonen -> getnNA
  Execution halted
** running tests for arch 'x64' ... ERROR
Running the tests in 'tests/R_interface_test.R' failed.
Last 13 lines of output:
  [43,] 1.223900e-02 8.642293e-03 8.385248e-03 8.385248e-03 8.944266e-03
  [44,] 1.643466e-02 8.464073e-03 8.385262e-03 8.385256e-03 8.944266e-03
  [45,] 1.006538e-02 1.083883e-03 9.619365e-09 9.625813e-09 3.363078e-09
  [46,] 9.552678e-03 3.248627e-03 1.036568e-06 7.799827e-09 1.862645e-10
  [47,] 6.303675e-03 7.552976e-03 2.165550e-03 6.479096e-04 3.664326e-05
  [48,] 3.939970e-03 7.668236e-03 5.878221e-03 4.351663e-03 3.998658e-03
  [49,] 2.659741e-03 5.515851e-03 4.496630e-03 3.124573e-03 3.998659e-03
  [50,] 2.828418e-03 5.656863e-03 2.829117e-03 3.665580e-05 6.107147e-05
  > library('kohonen')
  > sommap = Rsomoclu.kohonen(input_data, res)
  Error in if (maxNA.fraction > 0L) { : argument is of length zero
  Calls: Rsomoclu.kohonen -> map -> map.kohonen -> getnNA
  Execution halted
* checking PDF version of manual ... OK
* DONE
Status: 4 ERRORs, 1 WARNING, 1 NOTE