* using log directory 'd:/Rcompile/CRANpkg/local/3.2/SweaveListingUtils.Rcheck'
* using R version 3.2.5 (2016-04-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'SweaveListingUtils/DESCRIPTION' ... OK
* this is package 'SweaveListingUtils' version '0.7.5'
* package encoding: latin1
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SweaveListingUtils' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [7s] OK
* checking differences from 'SweaveListingUtils-Ex.Rout' to 'SweaveListingUtils-Ex.Rout.save' ... OK

828,875c828,875
< simulate,shapiro.test,setNames,selfStart,se.contrast,%
< screeplot,scatter.smooth,runmed,rmultinom,residuals.lm,%
< residuals.glm,reshape,reorder,rect.hclust,read.ftable,%
< rWishart,r2dtable,quasipoisson,quasibinomial,quade.test,%
< qbirthday,prop.trend.test,prop.test,promax,printCoefmat,%
< princomp,predict.lm,predict.glm,prcomp,ppr,%
< power.t.test,power.prop.test,power.anova.test,polym,poisson.test,%
< plot.ts,plot.stepfun,plot.spec.phase,plot.spec.coherency,plot.ecdf,%
< plclust,pbirthday,pairwise.wilcox.test,pairwise.table,pairwise.t.test,%
< pairwise.prop.test,pacf,p.adjust.methods,p.adjust,order.dendrogram,%
< optimHess,oneway.test,numericDeriv,nobs,nls.control,%
< nls,nlminb,naresid,naprint,napredict,%
< na.pass,na.omit,na.fail,na.exclude,na.contiguous,%
< na.action,mood.test,monthplot,model.weights,model.tables,%
< model.response,model.offset,model.matrix.lm,model.matrix.default,model.matrix,%
< model.frame.default,model.frame,model.extract,medpolish,median.default,%
< mcnemar.test,mauchly.test,mantelhaen.test,manova,makepredictcall,%
< makeARIMA,make.link,ls.print,ls.diag,logLik,%
< loess.smooth,loess.control,loess,loadings,lm.wfit,%
< lm.influence,lm.fit,line,lag.plot,lag,%
< ksmooth,ks.test,kruskal.test,knots,kmeans,%
< kernel,kernapply,isoreg,is.tskernel,is.ts,%
< is.stepfun,is.mts,is.leaf,is.empty.model,inverse.gaussian,%
< interaction.plot,integrate,influence.measures,heatmap,hclust,%
< hatvalues,glm.fit,glm.control,get_all_vars,getInitial,%
< getCall,friedman.test,fligner.test,fitted.values,fisher.test,%
< filter,factor.scope,factanal,expand.model.frame,estVar,%
< embed,eff.aovlist,ecdf,dummy.coef.lm,dummy.coef,%
< drop.terms,drop.scope,dmultinom,dist,diffinv,%
< dfbeta,df.residual,df.kernel,deriv3,density.default,%
< dendrapply,delete.response,decompose,cutree,cpgram,%
< cov2cor,cov.wt,cor.test,cophenetic,cooks.distance,%
< contrasts<-,contr.treatment,contr.sum,contr.poly,contr.helmert,%
< contr.SAS,constrOptim,confint.lm,confint.default,confint,%
< complete.cases,cmdscale,chisq.test,ccf,case.names,%
< cancor,bw.ucv,bw.nrd0,bw.nrd,bw.bcv,%
< bw.SJ,biplot,binom.test,bartlett.test,bandwidth.kernel,%
< asOneSidedFormula,as.ts,as.stepfun,as.hclust,as.formula,%
< as.dist,as.dendrogram,arima0.diag,arima0,arima.sim,%
< arima,ar.yw,ar.ols,ar.mle,ar.burg,%
< ar,ansari.test,aggregate.ts,aggregate.data.frame,addmargins,%
< add.scope,acf2AR,acf,TukeyHSD,StructTS,%
< SSweibull,SSmicmen,SSlogis,SSgompertz,SSfpl,%
< SSfol,SSbiexp,SSasympOrig,SSasympOff,SSasymp,%
< SSD,PP.test,NLSstRtAsymptote,NLSstLfAsymptote,NLSstClosestX,%
< NLSstAsymptotic,KalmanSmooth,KalmanRun,KalmanLike,KalmanForecast,%
< HoltWinters,Box.test,BIC,ARMAtoMA,ARMAacf,%
< AIC%
---
> simulate,sigma,shapiro.test,setNames,selfStart,%
> se.contrast,screeplot,scatter.smooth,runmed,rmultinom,%
> residuals.lm,residuals.glm,reshape,reorder,rect.hclust,%
> read.ftable,rWishart,r2dtable,quasipoisson,quasibinomial,%
> quade.test,qbirthday,prop.trend.test,prop.test,promax,%
> printCoefmat,princomp,predict.lm,predict.glm,prcomp,%
> ppr,power.t.test,power.prop.test,power.anova.test,polym,%
> poisson.test,plot.ts,plot.stepfun,plot.spec.phase,plot.spec.coherency,%
> plot.ecdf,plclust,pbirthday,pairwise.wilcox.test,pairwise.table,%
> pairwise.t.test,pairwise.prop.test,pacf,p.adjust.methods,p.adjust,%
> order.dendrogram,optimHess,oneway.test,numericDeriv,nobs,%
> nls.control,nls,nlminb,naresid,naprint,%
> napredict,na.pass,na.omit,na.fail,na.exclude,%
> na.contiguous,na.action,mood.test,monthplot,model.weights,%
> model.tables,model.response,model.offset,model.matrix.lm,model.matrix.default,%
> model.matrix,model.frame.default,model.frame,model.extract,medpolish,%
> median.default,mcnemar.test,mauchly.test,mantelhaen.test,manova,%
> makepredictcall,makeARIMA,make.link,ls.print,ls.diag,%
> logLik,loess.smooth,loess.control,loess,loadings,%
> lm.wfit,lm.influence,lm.fit,line,lag.plot,%
> lag,ksmooth,ks.test,kruskal.test,knots,%
> kmeans,kernel,kernapply,isoreg,is.tskernel,%
> is.ts,is.stepfun,is.mts,is.leaf,is.empty.model,%
> inverse.gaussian,interaction.plot,integrate,influence.measures,heatmap,%
> hclust,hatvalues,glm.fit,glm.control,get_all_vars,%
> getInitial,getCall,friedman.test,fligner.test,fitted.values,%
> fisher.test,filter,factor.scope,factanal,expand.model.frame,%
> estVar,embed,eff.aovlist,ecdf,dummy.coef.lm,%
> dummy.coef,drop.terms,drop.scope,dmultinom,dist,%
> diffinv,dfbeta,df.residual,df.kernel,deriv3,%
> density.default,dendrapply,delete.response,decompose,cutree,%
> cpgram,cov2cor,cov.wt,cor.test,cophenetic,%
> cooks.distance,contrasts<-,contr.treatment,contr.sum,contr.poly,%
> contr.helmert,contr.SAS,constrOptim,confint.lm,confint.default,%
> confint,complete.cases,cmdscale,chisq.test,ccf,%
> case.names,cancor,bw.ucv,bw.nrd0,bw.nrd,%
> bw.bcv,bw.SJ,biplot,binom.test,bartlett.test,%
> bandwidth.kernel,asOneSidedFormula,as.ts,as.stepfun,as.hclust,%
> as.formula,as.dist,as.dendrogram,arima0.diag,arima0,%
> arima.sim,arima,ar.yw,ar.ols,ar.mle,%
> ar.burg,ar,ansari.test,aggregate.ts,aggregate.data.frame,%
> addmargins,add.scope,acf2AR,acf,TukeyHSD,%
> StructTS,SSweibull,SSmicmen,SSlogis,SSgompertz,%
> SSfpl,SSfol,SSbiexp,SSasympOrig,SSasympOff,%
> SSasymp,SSD,PP.test,NLSstRtAsymptote,NLSstLfAsymptote,%
> NLSstClosestX,NLSstAsymptotic,KalmanSmooth,KalmanRun,KalmanLike,%
> KalmanForecast,HoltWinters,Box.test,BIC,ARMAtoMA,%
> ARMAacf,AIC%
Warning message:
running command 'diff -bw "D:\temp\RtmpemFldE\Rdiffa3f00649f7b0a" "D:\temp\RtmpemFldE\Rdiffb3f00497d2b55"' had status 1 
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... [4s] OK
* checking re-building of vignette outputs ... [24s] OK
* checking PDF version of manual ... OK
* DONE
Status: OK