* using log directory 'd:/Rcompile/CRANpkg/local/3.2/dlmap.Rcheck'
* using R version 3.2.5 (2016-04-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'dlmap/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'dlmap' version '1.13'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'asreml'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'dlmap' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls to packages already attached by Depends:
  'nlme' 'wgaim'
  Please remove these calls from your code.
'library' or 'require' call to 'asreml' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
  'ibdreg' 'mgcv' 'nlme' 'qtl' 'wgaim'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Unexported object imported by a ':::' call: 'qtl:::adjust.rf.ri'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... NOTE
Foreign function call to a different package:
  .C(cfunc, ..., PACKAGE = "qtl")
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
* checking R code for possible problems ... NOTE
calc.genoprob2: no visible binding for global variable 'mf.k'
calc.genoprob2: no visible binding for global variable 'mf.cf'
calc.genoprob2: no visible binding for global variable 'mf.m'
calc.genoprob2: no visible binding for global variable 'mf.h'
calc.genoprob2: no visible global function definition for 'nind'
calc.genoprob2: no visible global function definition for 'nchr'
calc.genoprob2: no visible global function definition for 'nmar'
calc.genoprob2: no visible global function definition for
  'getgenonames'
calcpos: no visible global function definition for 'nchr'
calcpos: no visible global function definition for 'nind'
calcpos: no visible global function definition for 'nmar'
calcpos: no visible global function definition for 'pull.map'
calcpos: no visible global function definition for 'calc.genoprob'
dlcross.cross: no visible global function definition for 'nind'
dlcross.cross: no visible global function definition for 'fill.geno'
dlcross.cross: no visible global function definition for 'pull.map'
dlcross.cross: no visible global function definition for 'est.map'
dlcross.cross: no visible global function definition for 'replace.map'
dlcross.dlmap: no visible global function definition for 'fill.geno'
dlcross.dlmap: no visible global function definition for 'est.map'
dlcross.dlmap: no visible global function definition for 'replace.map'
dlcross.dlmap: no visible global function definition for 'pull.map'
dlmap: no visible global function definition for 'asreml.Ainverse'
dlmap: no visible global function definition for 'Ginv'
dlmapdet: no visible global function definition for 'mroot'
dlmapdet: no visible global function definition for 'groupedData'
dlmapdet: no visible global function definition for 'lme'
dlmapdet: no visible global function definition for 'lmeControl'
dlmaploc: no visible global function definition for 'mroot'
dlmaploc: no visible global function definition for 'groupedData'
dlmaploc: no visible global function definition for 'lme'
dlmaploc: no visible global function definition for 'lmeControl'
dltest: no visible global function definition for 'mroot'
dltest: no visible global function definition for 'asreml'
dltest: no visible global function definition for 'groupedData'
dltest: no visible global function definition for 'lme'
dltest: no visible global function definition for 'lmeControl'
nmrk.dlcross: no visible global function definition for 'nmar'
plot.dlmap: no visible global function definition for 'nchr'
plot.dlmap: no visible global function definition for 'link.map.cross'
plot.dlmap: no visible global function definition for 'pull.map'
plot.dlmap: no visible global function definition for 'find.markerpos'
pvfx: no visible global function definition for 'pchibar'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [4s] OK
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs