* using log directory 'd:/Rcompile/CRANpkg/local/3.2/eiPack.Rcheck'
* using R version 3.2.5 (2016-04-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'eiPack/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'eiPack' version '0.1-7'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'eiPack' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
  LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'MASS' 'coda' 'msm'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ei.MD.bayes: warning in BayesMDei2(formula, data, total = total,
  lambda1 = lambda1, lambda2 = lambda2, tune.alpha = tune.alpha,
  tune.beta = tune.beta, start.alpha = start.alphas, start.betas =
  start.betas, sample = sample, thin = thin, burnin = burnin, verbose =
  verbose, ret.beta = ret.beta, ret.mcmc = ret.mcmc, usrfun = usrfun):
  partial argument match of 'start.alpha' to 'start.alphas'
tuneMD: warning in ei.MD.bayes(formula, covariate = covariate, data =
  data, sample = sample, thin = thin, burnin = burnin, tune = tl, ...):
  partial argument match of 'tune' to 'tune.list'
bayes.regress : truncMVRnorm: no visible global function definition for
  'mvrnorm'
bayes.regress: no visible binding for global variable 'mvrnorm'
cover.plot: no visible global function definition for 'is.mcmc'
density.plot.lambdaMD: no visible global function definition for
  'is.mcmc'
density.plot.lambdaRegBayes: no visible global function definition for
  'is.mcmc'
lambda.MD: no visible global function definition for 'is.mcmc'
lambda.MD: no visible global function definition for 'mcpar'
mergeMD: no visible global function definition for 'mcmc'
print.eiMD: no visible global function definition for 'is.mcmc'
read.betas: no visible global function definition for 'as.mcmc'
summary.eiMD: no visible global function definition for 'is.mcmc'
summary.lambdaRegBayes: no visible global function definition for
  'is.mcmc'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'density.plot':
  'density.plot'

S3 methods shown with full name in documentation object 'plot.bounds':
  'plot.bounds'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking examples ...
** running examples for arch 'i386' ... [2s] OK
** running examples for arch 'x64' ... [3s] OK
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs