* using log directory 'd:/Rcompile/CRANpkg/local/3.2/intReg.Rcheck' * using R version 3.2.5 (2016-04-14) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'intReg/DESCRIPTION' ... OK * this is package 'intReg' version '0.2-8' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'intReg' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [11s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [7s] OK Running 'intReg.R' [7s] Comparing 'intReg.Rout' to 'intReg.Rout.save' ...35c35 < 7.392272 -0.255738 0.372819 -0.044662 -0.195330 -0.034821 --- > 7.390819 -0.255675 0.372862 -0.044666 -0.195242 -0.034879 37c37 < -0.687016 -0.864356 -0.012266 0.145239 0.002322 -0.157660 --- > -0.687059 -0.864370 -0.012024 0.145218 0.002306 -0.157557 39c39 < 0.539081 0.521046 -1.509030 0.237458 0.275769 -0.125698 --- > 0.539109 0.521039 -1.508886 0.237526 0.275681 -0.125687 41c41 < 0.436253 2.612309 --- > 0.436197 2.612337 44c44 < 7.392272 -0.255738 0.372819 -0.044662 -0.195330 -0.034821 --- > 7.390819 -0.255675 0.372862 -0.044666 -0.195242 -0.034879 46c46 < -0.687016 -0.864356 -0.012266 0.145239 0.002322 -0.157660 --- > -0.687059 -0.864370 -0.012024 0.145218 0.002306 -0.157557 48c48 < 0.539081 0.521046 -1.509030 0.237458 0.275769 -0.125698 --- > 0.539109 0.521039 -1.508886 0.237526 0.275681 -0.125687 50c50 < 0.436253 -Inf 0.693147 -Inf 1.609438 -Inf --- > 0.436197 -Inf 0.693147 -Inf 1.609438 -Inf 58c58 < Inf 5.521461 Inf 2.612309 --- > Inf 5.521461 Inf 2.612337 61c61 < 2.95565 0.51570 0.31160 0.01543 0.14256 0.23038 --- > 2.95567 0.51571 0.31161 0.01543 0.14256 0.23039 63c63 < 0.19383 0.20823 0.29107 0.25380 0.20609 0.20115 --- > 0.19383 0.20823 0.29107 0.25379 0.20609 0.20115 65,75c65,67 < 0.20615 0.20251 1.05768 0.46895 0.52455 0.15554 < majoryes L 1 U 1 L 2 U 2 L 3 < 0.44708 0.00000 0.00000 0.00000 0.00000 0.00000 < U 3 L 4 U 4 L 5 U 5 L 6 < 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 < U 6 L 7 U 7 L 8 U 8 L 9 < 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 < U 9 L 10 U 10 L 11 U 11 L 12 < 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 < U 12 L 13 U 13 sigma < 0.00000 0.00000 0.00000 0.34250 --- > 0.20615 0.20251 1.05768 0.46896 0.52456 0.15555 > majoryes sigma > 0.44708 0.34251 78c70 < 2.95565 0.51570 0.31160 0.01543 0.14256 0.23038 --- > 2.95567 0.51571 0.31161 0.01543 0.14256 0.23039 80c72 < 0.19383 0.20823 0.29107 0.25380 0.20609 0.20115 --- > 0.19383 0.20823 0.29107 0.25379 0.20609 0.20115 82,92c74,76 < 0.20615 0.20251 1.05768 0.46895 0.52455 0.15554 < majoryes L 1 U 1 L 2 U 2 L 3 < 0.44708 0.00000 0.00000 0.00000 0.00000 0.00000 < U 3 L 4 U 4 L 5 U 5 L 6 < 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 < U 6 L 7 U 7 L 8 U 8 L 9 < 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 < U 9 L 10 U 10 L 11 U 11 L 12 < 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 < U 12 L 13 U 13 sigma < 0.00000 0.00000 0.00000 0.34250 --- > 0.20615 0.20251 1.05768 0.46896 0.52456 0.15555 > majoryes sigma > 0.44708 0.34251 97c81 < BHHH maximisation, 12 iterations --- > BHHH maximisation, 18 iterations 102,121c86,105 < (Intercept) 7.39227 2.95565 2.50 0.01295 * < sexmale -0.25574 0.51570 -0.50 0.62035 < log(income) 0.37282 0.31160 1.20 0.23253 < age -0.04466 0.01543 -2.90 0.00409 ** < schooling -0.19533 0.14256 -1.37 0.17173 < recparks -0.03482 0.23038 -0.15 0.87997 < jobs -0.68702 0.19383 -3.54 0.00046 *** < lowrisk -0.86436 0.20823 -4.15 4.4e-05 *** < wildlife -0.01227 0.29107 -0.04 0.96642 < future 0.14524 0.25380 0.57 0.56761 < aboriginal 0.00232 0.20609 0.01 0.99102 < finben -0.15766 0.20115 -0.78 0.43382 < mineparks 0.53908 0.20615 2.61 0.00941 ** < moreparks 0.52105 0.20251 2.57 0.01060 * < gov -1.50903 1.05768 -1.43 0.15477 < envconyes 0.23746 0.46895 0.51 0.61300 < vparksyes 0.27577 0.52455 0.53 0.59950 < tvenv -0.12570 0.15554 -0.81 0.41970 < majoryes 0.43625 0.44708 0.98 0.33001 < sigma 2.61231 0.34250 7.63 3.8e-13 *** --- > (Intercept) 7.39082 2.95567 2.50 0.01297 * > sexmale -0.25567 0.51571 -0.50 0.62044 > log(income) 0.37286 0.31161 1.20 0.23248 > age -0.04467 0.01543 -2.90 0.00408 ** > schooling -0.19524 0.14256 -1.37 0.17192 > recparks -0.03488 0.23039 -0.15 0.87978 > jobs -0.68706 0.19383 -3.54 0.00046 *** > lowrisk -0.86437 0.20823 -4.15 4.4e-05 *** > wildlife -0.01202 0.29107 -0.04 0.96708 > future 0.14522 0.25379 0.57 0.56765 > aboriginal 0.00231 0.20609 0.01 0.99108 > finben -0.15756 0.20115 -0.78 0.43411 > mineparks 0.53911 0.20615 2.62 0.00940 ** > moreparks 0.52104 0.20251 2.57 0.01060 * > gov -1.50889 1.05768 -1.43 0.15481 > envconyes 0.23753 0.46896 0.51 0.61291 > vparksyes 0.27568 0.52456 0.53 0.59962 > tvenv -0.12569 0.15555 -0.81 0.41976 > majoryes 0.43620 0.44708 0.98 0.33007 > sigma 2.61234 NA NA NA 129c113 < BHHH maximisation, 12 iterations --- > BHHH maximisation, 18 iterations 134,179c118,163 < (Intercept) 7.39227 2.95565 2.50 0.01295 * < sexmale -0.25574 0.51570 -0.50 0.62035 < log(income) 0.37282 0.31160 1.20 0.23253 < age -0.04466 0.01543 -2.90 0.00409 ** < schooling -0.19533 0.14256 -1.37 0.17173 < recparks -0.03482 0.23038 -0.15 0.87997 < jobs -0.68702 0.19383 -3.54 0.00046 *** < lowrisk -0.86436 0.20823 -4.15 4.4e-05 *** < wildlife -0.01227 0.29107 -0.04 0.96642 < future 0.14524 0.25380 0.57 0.56761 < aboriginal 0.00232 0.20609 0.01 0.99102 < finben -0.15766 0.20115 -0.78 0.43382 < mineparks 0.53908 0.20615 2.61 0.00941 ** < moreparks 0.52105 0.20251 2.57 0.01060 * < gov -1.50903 1.05768 -1.43 0.15477 < envconyes 0.23746 0.46895 0.51 0.61300 < vparksyes 0.27577 0.52455 0.53 0.59950 < tvenv -0.12570 0.15554 -0.81 0.41970 < majoryes 0.43625 0.44708 0.98 0.33001 < L 1 -Inf 0.00000 -Inf < 2e-16 *** < U 1 0.69315 0.00000 Inf < 2e-16 *** < L 2 -Inf 0.00000 -Inf < 2e-16 *** < U 2 1.60944 0.00000 Inf < 2e-16 *** < L 3 -Inf 0.00000 -Inf < 2e-16 *** < U 3 2.99573 0.00000 Inf < 2e-16 *** < L 4 -Inf 0.00000 -Inf < 2e-16 *** < U 4 3.91202 0.00000 Inf < 2e-16 *** < L 5 0.69315 0.00000 Inf < 2e-16 *** < U 5 1.60944 0.00000 Inf < 2e-16 *** < L 6 1.60944 0.00000 Inf < 2e-16 *** < U 6 2.99573 0.00000 Inf < 2e-16 *** < L 7 2.99573 0.00000 Inf < 2e-16 *** < U 7 3.91202 0.00000 Inf < 2e-16 *** < L 8 2.99573 0.00000 Inf < 2e-16 *** < U 8 Inf 0.00000 Inf < 2e-16 *** < L 9 3.91202 0.00000 Inf < 2e-16 *** < U 9 4.60517 0.00000 Inf < 2e-16 *** < L 10 3.91202 0.00000 Inf < 2e-16 *** < U 10 Inf 0.00000 Inf < 2e-16 *** < L 11 4.60517 0.00000 Inf < 2e-16 *** < U 11 5.52146 0.00000 Inf < 2e-16 *** < L 12 4.60517 0.00000 Inf < 2e-16 *** < U 12 Inf 0.00000 Inf < 2e-16 *** < L 13 5.52146 0.00000 Inf < 2e-16 *** < U 13 Inf 0.00000 Inf < 2e-16 *** < sigma 2.61231 0.34250 7.63 3.8e-13 *** --- > (Intercept) 7.39082 2.95567 2.50 0.01297 * > sexmale -0.25567 0.51571 -0.50 0.62044 > log(income) 0.37286 0.31161 1.20 0.23248 > age -0.04467 0.01543 -2.90 0.00408 ** > schooling -0.19524 0.14256 -1.37 0.17192 > recparks -0.03488 0.23039 -0.15 0.87978 > jobs -0.68706 0.19383 -3.54 0.00046 *** > lowrisk -0.86437 0.20823 -4.15 4.4e-05 *** > wildlife -0.01202 0.29107 -0.04 0.96708 > future 0.14522 0.25379 0.57 0.56765 > aboriginal 0.00231 0.20609 0.01 0.99108 > finben -0.15756 0.20115 -0.78 0.43411 > mineparks 0.53911 0.20615 2.62 0.00940 ** > moreparks 0.52104 0.20251 2.57 0.01060 * > gov -1.50889 1.05768 -1.43 0.15481 > envconyes 0.23753 0.46896 0.51 0.61291 > vparksyes 0.27568 0.52456 0.53 0.59962 > tvenv -0.12569 0.15555 -0.81 0.41976 > majoryes 0.43620 0.44708 0.98 0.33007 > L 1 -Inf 0.34251 -Inf < 2e-16 *** > U 1 0.69315 2.95567 0.23 0.81476 > L 2 -Inf 0.51571 -Inf < 2e-16 *** > U 2 1.60944 0.31161 5.16 4.6e-07 *** > L 3 -Inf 0.01543 -Inf < 2e-16 *** > U 3 2.99573 0.14256 21.01 < 2e-16 *** > L 4 -Inf 0.23039 -Inf < 2e-16 *** > U 4 3.91202 0.19383 20.18 < 2e-16 *** > L 5 0.69315 0.20823 3.33 0.00099 *** > U 5 1.60944 0.29107 5.53 7.4e-08 *** > L 6 1.60944 0.25379 6.34 9.1e-10 *** > U 6 2.99573 0.20609 14.54 < 2e-16 *** > L 7 2.99573 0.20115 14.89 < 2e-16 *** > U 7 3.91202 0.20615 18.98 < 2e-16 *** > L 8 2.99573 0.20251 14.79 < 2e-16 *** > U 8 Inf 1.05768 Inf < 2e-16 *** > L 9 3.91202 0.46896 8.34 3.4e-15 *** > U 9 4.60517 0.52456 8.78 < 2e-16 *** > L 10 3.91202 0.15555 25.15 < 2e-16 *** > U 10 Inf 0.44708 Inf < 2e-16 *** > L 11 4.60517 0.34251 13.45 < 2e-16 *** > U 11 5.52146 2.95567 1.87 0.06279 . > L 12 4.60517 0.51571 8.93 < 2e-16 *** > U 12 Inf 0.31161 Inf < 2e-16 *** > L 13 5.52146 0.01543 357.93 < 2e-16 *** > U 13 Inf 0.14256 Inf < 2e-16 *** > sigma 2.61234 0.23039 11.34 < 2e-16 *** 182a167,173 > Warning messages: > 1: In coef/stdErr : > longer object length is not a multiple of shorter object length > 2: In cbind(coef, stdErr, coef/stdErr, rep(NA, length(coef))) : > number of rows of result is not a multiple of vector length (arg 2) > 3: In coef/stdErr : > longer object length is not a multiple of shorter object length 232,235d222 < The following object is masked from 'package:base': < < sign < 262c249 < BHHH maximisation, 8 iterations --- > BHHH maximisation, 12 iterations 267,274c254,261 < (Intercept) 1.89399 0.03865 49.01 < 2e-16 *** < factor(educ)2 0.21310 0.04333 4.92 9.7e-07 *** < factor(educ)3 0.36880 0.04173 8.84 < 2e-16 *** < factor(educ)4 0.53003 0.04307 12.31 < 2e-16 *** < factor(educ)5 0.71760 0.04168 17.22 < 2e-16 *** < poly(exper, 2)1 6.49887 0.35541 18.29 < 2e-16 *** < poly(exper, 2)2 -2.16802 0.28944 -7.49 1.2e-13 *** < sigma 0.28466 0.00606 46.96 < 2e-16 *** --- > (Intercept) 1.8940 0.0386 49.01 < 2e-16 *** > factor(educ)2 0.2131 0.0433 4.92 9.7e-07 *** > factor(educ)3 0.3688 0.0417 8.84 < 2e-16 *** > factor(educ)4 0.5300 0.0431 12.31 < 2e-16 *** > factor(educ)5 0.7176 0.0417 17.22 < 2e-16 *** > poly(exper, 2)1 6.4987 0.3554 18.28 < 2e-16 *** > poly(exper, 2)2 -2.1680 0.2895 -7.49 1.2e-13 *** > sigma 0.2847 NA NA NA 339c326 < BHHH maximisation, 66 iterations --- > BHHH maximisation, 97 iterations 344,346c331,333 < (Intercept) 0.002874 0.000871 3.30 0.0014 ** < c 0.000121 0.000328 0.37 0.7121 < sigma 0.003571 0.000208 17.18 <2e-16 *** --- > (Intercept) 0.002875 0.000870 3.30 0.0014 ** > c 0.000121 0.000328 0.37 0.7128 > sigma 0.003569 NA NA NA * checking PDF version of manual ... OK * DONE Status: OK