* using log directory 'd:/Rcompile/CRANpkg/local/3.2/pbdBASE.Rcheck'
* using R version 3.2.5 (2016-04-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'pbdBASE/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pbdBASE' version '0.4-5'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pbdBASE' can be installed ... ERROR
Installation failed.
See 'd:/Rcompile/CRANpkg/local/3.2/pbdBASE.Rcheck/00install.out' for details.
* DONE
The installation logfile:
* installing *source* package 'pbdBASE' ...
** package 'pbdBASE' successfully unpacked and MD5 sums checked
** libs

*** arch - i386
make[1]: Entering directory `/cygdrive/d/temp/RtmpYNmN3t/R.INSTALL22ec45974ffe/pbdBASE/src-i386'
echo 'RNACI_CPPFLAGS = ' > Makeconf
echo 'RNACI_LDFLAGS = ' >> Makeconf
echo 'SLAP_LDFLAGS = d:/RCompile/CRANpkg/lib/3.2/pbdSLAP/lib/i386/libslap.a' >> Makeconf
echo 'MPI_ROOT = C:/Program Files/Microsoft MPI/' >> Makeconf
echo 'MPI_INCLUDE = C:/Program Files/Microsoft MPI/Inc/' >> Makeconf
echo 'MPI_LIB = C:/Program Files/Microsoft MPI/Lib/i386/msmpi.lib' >> Makeconf
echo 'PKG_CPPFLAGS = -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI' >> Makeconf
echo 'PKG_CFLAGS = -fopenmp ' >> Makeconf
echo 'PKG_FFLAGS = -fopenmp ' >> Makeconf
echo 'PKG_LIBS = "d:/RCompile/CRANpkg/lib/3.2/pbdSLAP/lib/i386/libslap.a" -L"D:/RCompile/recent/R-3.2.5/bin/i386" -lRlapack -L"D:/RCompile/recent/R-3.2.5/bin/i386" -lRblas -lgfortran "C:/Program Files/Microsoft MPI/Lib/i386/msmpi.lib"  -fopenmp' >> Makeconf
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base_lm.c -o base_lm.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base_matexp.c -o base_matexp.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base_mpi_blacs.c -o base_mpi_blacs.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base_mpi_blacs_reductions.c -o base_mpi_blacs_reductions.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base_p_matexp.c -o base_p_matexp.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base_pblas_level3.c -o base_pblas_level3.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base_plinalg.c -o base_plinalg.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base_prblas.c -o base_prblas.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base_putil.c -o base_putil.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base_qr.c -o base_qr.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base_scalapack.c -o base_scalapack.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base_scalapack_utility.c -o base_scalapack_utility.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base_variance.c -o base_variance.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c comm_utils.c -o comm_utils.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c coords.c -o coords.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c descinit.c -o descinit.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c other.c -o other.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c redist.c -o redist.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base/bprnt_c.c -o base/bprnt_c.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base/expm/matexp.c -o base/expm/matexp.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base/expm/p_matexp.c -o base/expm/p_matexp.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base/expm/pade_coefs.c -o base/expm/pade_coefs.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base/utils/redist.c -o base/utils/redist.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c base/utils/scale.c -o base/utils/scale.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c export_blacs/pkg_tools.c -o export_blacs/pkg_tools.o
In file included from export_blacs/pkg_tools.c:11:0:
export_blacs/pkg_global.h:11:17: fatal error: mpi.h: No such file or directory
compilation terminated.
make[1]: *** [export_blacs/pkg_tools.o] Error 1
make[1]: Leaving directory `/cygdrive/d/temp/RtmpYNmN3t/R.INSTALL22ec45974ffe/pbdBASE/src-i386'
Warning: running command 'make -f "Makevars.win" -f "D:/RCompile/recent/R-3.2.5/etc/i386/Makeconf" -f "D:/RCompile/recent/R-3.2.5/etc/i386/Makevars.site" -f "D:/RCompile/recent/R-3.2.5/share/make/winshlib.mk" SHLIB="pbdBASE.dll" ' had status 2
make[1]: Entering directory `/cygdrive/d/temp/RtmpYNmN3t/R.INSTALL22ec45974ffe/pbdBASE/src-i386'
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files/Microsoft MPI/Inc/"  -I../inst/RNACI    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp    -O3 -Wall  -std=gnu99 -mtune=core2 -c export_blacs/pkg_tools.c -o export_blacs/pkg_tools.o
In file included from export_blacs/pkg_tools.c:11:0:
export_blacs/pkg_global.h:11:17: fatal error: mpi.h: No such file or directory
compilation terminated.
make[1]: *** [export_blacs/pkg_tools.o] Error 1
make[1]: Leaving directory `/cygdrive/d/temp/RtmpYNmN3t/R.INSTALL22ec45974ffe/pbdBASE/src-i386'
Warning: running command 'make -f "Makevars.win" -f "D:/RCompile/recent/R-3.2.5/etc/i386/Makeconf" -f "D:/RCompile/recent/R-3.2.5/etc/i386/Makevars.site" -f "D:/RCompile/recent/R-3.2.5/share/make/winshlib.mk" SHLIB="pbdBASE.dll"  symbols.rds' had status 2
ERROR: compilation failed for package 'pbdBASE'
* removing 'd:/Rcompile/CRANpkg/lib/3.2/pbdBASE'
* restoring previous 'd:/Rcompile/CRANpkg/lib/3.2/pbdBASE'