* using log directory 'd:/Rcompile/CRANpkg/local/3.2/pbdMPI.Rcheck' * using R version 3.2.5 (2016-04-14) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'pbdMPI/DESCRIPTION' ... OK * this is package 'pbdMPI' version '0.3-2' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'pbdMPI' can be installed ... ERROR Installation failed. See 'd:/Rcompile/CRANpkg/local/3.2/pbdMPI.Rcheck/00install.out' for details. * DONE The installation logfile: * installing *source* package 'pbdMPI' ... ** package 'pbdMPI' successfully unpacked and MD5 sums checked ** libs *** arch - i386 make[1]: Entering directory `/cygdrive/d/temp/Rtmpghxe53/R.INSTALL2f6444aa6345/pbdMPI/src-i386' echo 'MPI_ROOT = C:/Program Files (x86)/Microsoft SDKs/MPI/' > Makeconf echo 'MPI_INCLUDE = C:/Program Files (x86)/Microsoft SDKs/MPI/Include/' >> Makeconf echo 'MPI_LIB = C:/Program Files (x86)/Microsoft SDKs/MPI/Lib/x86/msmpi.lib' >> Makeconf echo 'WIN_FLAGS = -DWIN -DMSMPI_NO_DEPRECATE_20' >> Makeconf gcc -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files (x86)/Microsoft SDKs/MPI/Include/" -DMPI2 -DWIN -DMSMPI_NO_DEPRECATE_20 -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c comm_errors.c -o comm_errors.o gcc -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files (x86)/Microsoft SDKs/MPI/Include/" -DMPI2 -DWIN -DMSMPI_NO_DEPRECATE_20 -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c comm_sort_double.c -o comm_sort_double.o In file included from pkg_global.h:16:0, from spmd.h:7, from comm_api.h:7, from comm_sort_double.c:1: C:/Program Files (x86)/Microsoft SDKs/MPI/Include/mpi.h:50:17: fatal error: sal.h: No such file or directory compilation terminated. make[1]: *** [comm_sort_double.o] Error 1 make[1]: Leaving directory `/cygdrive/d/temp/Rtmpghxe53/R.INSTALL2f6444aa6345/pbdMPI/src-i386' Warning: running command 'make -f "Makevars.win" -f "D:/RCompile/recent/R-3.2.5/etc/i386/Makeconf" -f "D:/RCompile/recent/R-3.2.5/etc/i386/Makevars.site" -f "D:/RCompile/recent/R-3.2.5/share/make/winshlib.mk" SHLIB="pbdMPI.dll" OBJECTS="comm_errors.o comm_sort_double.o comm_sort_integer.o pkg_dl.o pkg_tools.o spmd.o spmd_allgather.o spmd_allgatherv.o spmd_allreduce.o spmd_alltoall.o spmd_alltoallv.o spmd_bcast.o spmd_communicator.o spmd_communicator_spawn.o spmd_gather.o spmd_gatherv.o spmd_info.o spmd_recv.o spmd_reduce.o spmd_scatter.o spmd_scatterv.o spmd_send.o spmd_sendrecv.o spmd_sendrecv_replace.o spmd_tool.o spmd_utility.o spmd_wait.o zzz.o"' had status 2 make[1]: Entering directory `/cygdrive/d/temp/Rtmpghxe53/R.INSTALL2f6444aa6345/pbdMPI/src-i386' gcc -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I"C:/Program Files (x86)/Microsoft SDKs/MPI/Include/" -DMPI2 -DWIN -DMSMPI_NO_DEPRECATE_20 -I"d:/RCompile/r-compiling/local/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c comm_sort_double.c -o comm_sort_double.o In file included from pkg_global.h:16:0, from spmd.h:7, from comm_api.h:7, from comm_sort_double.c:1: C:/Program Files (x86)/Microsoft SDKs/MPI/Include/mpi.h:50:17: fatal error: sal.h: No such file or directory compilation terminated. make[1]: *** [comm_sort_double.o] Error 1 make[1]: Leaving directory `/cygdrive/d/temp/Rtmpghxe53/R.INSTALL2f6444aa6345/pbdMPI/src-i386' Warning: running command 'make -f "Makevars.win" -f "D:/RCompile/recent/R-3.2.5/etc/i386/Makeconf" -f "D:/RCompile/recent/R-3.2.5/etc/i386/Makevars.site" -f "D:/RCompile/recent/R-3.2.5/share/make/winshlib.mk" SHLIB="pbdMPI.dll" OBJECTS="comm_errors.o comm_sort_double.o comm_sort_integer.o pkg_dl.o pkg_tools.o spmd.o spmd_allgather.o spmd_allgatherv.o spmd_allreduce.o spmd_alltoall.o spmd_alltoallv.o spmd_bcast.o spmd_communicator.o spmd_communicator_spawn.o spmd_gather.o spmd_gatherv.o spmd_info.o spmd_recv.o spmd_reduce.o spmd_scatter.o spmd_scatterv.o spmd_send.o spmd_sendrecv.o spmd_sendrecv_replace.o spmd_tool.o spmd_utility.o spmd_wait.o zzz.o" symbols.rds' had status 2 ERROR: compilation failed for package 'pbdMPI' * removing 'd:/Rcompile/CRANpkg/lib/3.2/pbdMPI' * restoring previous 'd:/Rcompile/CRANpkg/lib/3.2/pbdMPI'