* using log directory 'd:/Rcompile/CRANpkg/local/3.2/rsgcc.Rcheck'
* using R version 3.2.5 (2016-04-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'rsgcc/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rsgcc' version '1.0.6'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
  'biwt' 'cairoDevice' 'fBasics' 'gplots' 'gWidgets' 'gWidgetsRGtk2'
  'minerva' 'parmigene' 'stringr' 'snowfall'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rsgcc' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls to packages already attached by Depends:
  'grDevices' 'snowfall'
  Please remove these calls from your code.
'library' or 'require' call to 'ctc' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
  'biwt' 'cairoDevice' 'fBasics' 'gWidgets' 'gWidgetsRGtk2' 'gplots'
  'minerva' 'parmigene' 'snowfall' 'stringr'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.cor_all: no visible global function definition for 'as.big.matrix'
adjacencymatrix: no visible global function definition for
  'as.big.matrix'
adjacencymatrix: no visible global function definition for 'mine'
adjacencymatrix: no visible global function definition for
  'knnmi.cross'
adjacencymatrix: no visible global function definition for 'knnmi.all'
cor.matrix: no visible global function definition for 'sfInit'
cor.matrix: no visible global function definition for 'sfCpus'
cor.matrix: no visible global function definition for 'sfApply'
cor.matrix: no visible global function definition for 'sfStop'
cor.pair : getcor: no visible global function definition for 'biwt.cor'
gcc.heatmap: no visible global function definition for 'invalid'
rsgcc.gui : coverDecToHex: no visible global function definition for
  '.dec.to.hex'
rsgcc.gui : coverDecToHex: no visible global function definition for
  'str_length'
rsgcc.gui : coverDecToHex: no visible global function definition for
  'str_sub'
rsgcc.gui : fileChoose: no visible global function definition for
  'gfile'
rsgcc.gui : fileChoose: no visible global function definition for
  'str_sub'
rsgcc.gui : fileChoose: no visible global function definition for
  'str_length'
rsgcc.gui : visData: no visible global function definition for 'svalue'
rsgcc.gui : visData: no visible global function definition for
  'gwindow'
rsgcc.gui : visData: no visible global function definition for 'ggroup'
rsgcc.gui : visData: no visible global function definition for 'gtable'
rsgcc.gui : updateHeatmapMax: no visible global function definition for
  'svalue'
rsgcc.gui : updateHeatmapMean: no visible global function definition
  for 'svalue'
rsgcc.gui : updateHeatmapMin: no visible global function definition for
  'svalue'
rsgcc.gui : saveData: no visible global function definition for 'r2atr'
rsgcc.gui : saveData: no visible global function definition for 'r2gtr'
rsgcc.gui : saveData: no visible global function definition for 'r2cdt'
rsgcc.gui: no visible global function definition for 'gwindow'
rsgcc.gui: no visible global function definition for 'ggroup'
rsgcc.gui: no visible global function definition for 'gframe'
rsgcc.gui: no visible global function definition for 'gbutton'
rsgcc.gui: no visible global function definition for 'gcheckbox'
rsgcc.gui : <anonymous>: no visible global function definition for
  'svalue'
rsgcc.gui: no visible global function definition for 'gedit'
rsgcc.gui: no visible global function definition for 'add'
rsgcc.gui: no visible global function definition for 'gradio'
rsgcc.gui: no visible global function definition for 'gcombobox'
rsgcc.gui: no visible global function definition for 'gslider'
rsgcc.gui: no visible global function definition for 'ggraphics'
uniqueTissues: no visible global function definition for 'str_sub'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ...
** running examples for arch 'i386' ... [6s] OK
** running examples for arch 'x64' ... [5s] OK
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs