* using log directory 'd:/Rcompile/CRANpkg/local/3.2/xgboost.Rcheck'
* using R version 3.2.5 (2016-04-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'xgboost/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'xgboost' version '0.6-2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'xgboost' can be installed ... ERROR
Installation failed.
See 'd:/Rcompile/CRANpkg/local/3.2/xgboost.Rcheck/00install.out' for details.
* DONE
The installation logfile:
* installing *source* package 'xgboost' ...
** package 'xgboost' successfully unpacked and MD5 sums checked

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs

*** arch - i386
make[1]: Entering directory `/cygdrive/d/temp/RtmpK0IGRw/R.INSTALL1db44f81265c/xgboost/src-i386'
g++  -std=c++0x -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp -pthread   -O2 -Wall  -mtune=core2 -c xgboost_R.cc -o xgboost_R.o
g++  -std=c++0x -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp -pthread   -O2 -Wall  -mtune=core2 -c xgboost_custom.cc -o xgboost_custom.o
gcc  -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_    -I"d:/RCompile/r-compiling/local/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c xgboost_assert.c -o xgboost_assert.o
g++  -std=c++0x -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp -pthread   -O2 -Wall  -mtune=core2 -c amalgamation/xgboost-all0.cc -o amalgamation/xgboost-all0.o
In file included from d:\compiler\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/cstdio:44:0,
                 from ./dmlc-core/include/dmlc/./logging.h:10,
                 from ./dmlc-core/include/dmlc/registry.h:13,
                 from ./include/xgboost/metric.h:10,
                 from amalgamation/../src/metric/metric.cc:6,
                 from amalgamation/xgboost-all0.cc:13:
d:\compiler\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../i686-w64-mingw32/include/stdio.h:396:83: error: 'FILE* std::fopen(const char*, const char*)' should have been declared inside 'std'
d:\compiler\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../i686-w64-mingw32/include/stdio.h:396:83: error: declaration of 'FILE* std::fopen(const char*, const char*)'
d:\compiler\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../i686-w64-mingw32/include/stdio.h:395:17: error: conflicts with previous declaration 'FILE* fopen(const char*, const char*)'
make[1]: *** [amalgamation/xgboost-all0.o] Error 1
make[1]: Leaving directory `/cygdrive/d/temp/RtmpK0IGRw/R.INSTALL1db44f81265c/xgboost/src-i386'
Warning: running command 'make -f "Makevars.win" -f "D:/RCompile/recent/R-3.2.5/etc/i386/Makeconf" -f "D:/RCompile/recent/R-3.2.5/etc/i386/Makevars.site" -f "D:/RCompile/recent/R-3.2.5/share/make/winshlib.mk" CXX='$(CXX1X) $(CXX1XSTD)' CXXFLAGS='$(CXX1XFLAGS)' CXXPICFLAGS='$(CXX1XPICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX1XLDFLAGS)' SHLIB_LD='$(SHLIB_CXX1XLD)' SHLIB="xgboost.dll" ' had status 2
make[1]: Entering directory `/cygdrive/d/temp/RtmpK0IGRw/R.INSTALL1db44f81265c/xgboost/src-i386'
g++  -std=c++0x -I"D:/RCompile/recent/R-3.2.5/include" -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_    -I"d:/RCompile/r-compiling/local/local323/include"  -fopenmp -pthread   -O2 -Wall  -mtune=core2 -c amalgamation/xgboost-all0.cc -o amalgamation/xgboost-all0.o
In file included from d:\compiler\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../include/c++/4.6.3/cstdio:44:0,
                 from ./dmlc-core/include/dmlc/./logging.h:10,
                 from ./dmlc-core/include/dmlc/registry.h:13,
                 from ./include/xgboost/metric.h:10,
                 from amalgamation/../src/metric/metric.cc:6,
                 from amalgamation/xgboost-all0.cc:13:
d:\compiler\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../i686-w64-mingw32/include/stdio.h:396:83: error: 'FILE* std::fopen(const char*, const char*)' should have been declared inside 'std'
d:\compiler\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../i686-w64-mingw32/include/stdio.h:396:83: error: declaration of 'FILE* std::fopen(const char*, const char*)'
d:\compiler\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../i686-w64-mingw32/include/stdio.h:395:17: error: conflicts with previous declaration 'FILE* fopen(const char*, const char*)'
make[1]: *** [amalgamation/xgboost-all0.o] Error 1
make[1]: Leaving directory `/cygdrive/d/temp/RtmpK0IGRw/R.INSTALL1db44f81265c/xgboost/src-i386'
Warning: running command 'make -f "Makevars.win" -f "D:/RCompile/recent/R-3.2.5/etc/i386/Makeconf" -f "D:/RCompile/recent/R-3.2.5/etc/i386/Makevars.site" -f "D:/RCompile/recent/R-3.2.5/share/make/winshlib.mk" CXX='$(CXX1X) $(CXX1XSTD)' CXXFLAGS='$(CXX1XFLAGS)' CXXPICFLAGS='$(CXX1XPICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX1XLDFLAGS)' SHLIB_LD='$(SHLIB_CXX1XLD)' SHLIB="xgboost.dll"  symbols.rds' had status 2
ERROR: compilation failed for package 'xgboost'
* removing 'd:/Rcompile/CRANpkg/lib/3.2/xgboost'
* restoring previous 'd:/Rcompile/CRANpkg/lib/3.2/xgboost'